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  • European Marine Science
  • 2012-2021
  • European Commission
  • IL
  • Mémoires en Sciences de l'Informati...

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Stéphanie Jacquet; Claire Garros; Eric Lombaert; Catherine Walton; +36 Authors

    AbstractUnderstanding the demographic history and genetic make‐up of colonizing species is critical for inferring population sources and colonization routes. This is of main interest for designing accurate control measures in areas newly colonized by vector species of economically important pathogens. The biting midge Culicoides imicola is a major vector of orbiviruses to livestock. Historically, the distribution of this species was limited to the Afrotropical region. Entomological surveys first revealed the presence of C. imicola in the south of the Mediterranean basin by the 1970s. Following recurrent reports of massive bluetongue outbreaks since the 1990s, the presence of the species was confirmed in northern areas. In this study, we addressed the chronology and processes of C. imicola colonization in the Mediterranean basin. We characterized the genetic structure of its populations across Mediterranean and African regions using both mitochondrial and nuclear markers, and combined phylogeographical analyses with population genetics and approximate Bayesian computation. We found a west/east genetic differentiation between populations, occurring both within Africa and within the Mediterranean basin. We demonstrated that three of these groups had experienced demographic expansions in the Pleistocene, probably because of climate changes during this period. Finally, we showed that C. imicola could have colonized the Mediterranean basin in the Late Pleistocene or Early Holocene through a single event of introduction; however, we cannot exclude the hypothesis involving two routes of colonization. Thus, the recent bluetongue outbreaks are not linked to C. imicola colonization event, but rather to biological changes in the vector or the virus.

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    Molecular Ecology
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    Molecular Ecology
    Other literature type . Article . 2015 . Peer-reviewed
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    Authors: Moore, C.; Mills, M.; Arrigo, K.; Berman-Frank, I.; +19 Authors

    Microbial activity is a fundamental component of oceanic nutrient cycles. Photosynthetic microbes, collectively termed phytoplankton, are responsible for the vast majority of primary production in marine waters. The availability of nutrients in the upper ocean frequently limits the activity and abundance of these organisms. Experimental data have revealed two broad regimes of phytoplankton nutrient limitation in the modern upper ocean. Nitrogen availability tends to limit productivity throughout much of the surface low-latitude ocean, where the supply of nutrients from the subsurface is relatively slow. In contrast, iron often limits productivity where subsurface nutrient supply is enhanced, including within the main oceanic upwelling regions of the Southern Ocean and the eastern equatorial Pacific. Phosphorus, vitamins and micronutrients other than iron may also (co-)limit marine phytoplankton. The spatial patterns and importance of co-limitation, however, remain unclear. Variability in the stoichiometries of nutrient supply and biological demand are key determinants of oceanic nutrient limitation. Deciphering the mechanisms that underpin this variability, and the consequences for marine microbes, will be a challenge. But such knowledge will be crucial for accurately predicting the consequences of ongoing anthropogenic perturbations to oceanic nutrient biogeochemistry. © 2013 Macmillan Publishers Limited. All rights reserved.

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    Oskar Bordeaux
    Article . 2013
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    Nature Geoscience
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    Nature Geoscience
    Article . 2013 . Peer-reviewed
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    Other literature type . 2013
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    Hal-Diderot
    Article . 2013
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Oskar Bordeauxarrow_drop_down
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      Oskar Bordeaux
      Article . 2013
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      Nature Geoscience
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Nature Geoscience
      Article . 2013 . Peer-reviewed
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      https://doi.org/10.7892/boris....
      Other literature type . 2013
      Data sources: Datacite
      Hal-Diderot
      Article . 2013
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    Authors: Marlee A. Tucker; Olga Alexandrou; Richard O. Bierregaard; Keith L. Bildstein; +62 Authors

    Aim: Animal movement is an important determinant of individual survival, population dynamics and ecosystem structure and function. Nonetheless, it is still unclear how local movements are related to resource availability and the spatial arrangement of resources. Using resident bird species and migratory bird species outside the migratory period, we examined how the distribution of resources affects the movement patterns of both large terrestrial birds (e.g., raptors, bustards and hornbills) and waterbirds (e.g., cranes, storks, ducks, geese and flamingos). Location: Global. Time period: 2003–2015. Major taxa studied: Birds. Methods: We compiled GPS tracking data for 386 individuals across 36 bird species. We calculated the straight‐line distance between GPS locations of each individual at the 1‐hr and 10‐day time‐scales. For each individual and time‐scale, we calculated the median and 0.95 quantile of displacement. We used linear mixed‐effects models to examine the effect of the spatial arrangement of resources, measured as enhanced vegetation index homogeneity, on avian movements, while accounting for mean resource availability, body mass, diet, flight type, migratory status and taxonomy and spatial autocorrelation. Results: We found a significant effect of resource spatial arrangement at the 1‐hr and 10‐day time‐scales. On average, individual movements were seven times longer in environments with homogeneously distributed resources compared with areas of low resource homogeneity. Contrary to previous work, we found no significant effect of resource availability, diet, flight type, migratory status or body mass on the non‐migratory movements of birds. Main conclusions: We suggest that longer movements in homogeneous environments might reflect the need for different habitat types associated with foraging and reproduction. This highlights the importance of landscape complementarity, where habitat patches within a landscape include a range of different, yet complementary resources. As habitat homogenization increases, it might force birds to travel increasingly longer distances to meet their diverse needs. National Trust for Scotland; Penguin Foundation; The U.S. Department of Energy, Grant/Award Number: DE-EE0005362; Australian Research Council; NASA's Arctic Boreal Vulnerability Experiment (ABoVE), Grant/Award Number: NNX15AV92A; Netherlands Organization for Scientific Research, Grant/Award Number: VIDI 864.10.006; BCC; NSF Award, Grant/Award Number: ABI-1458748; U.K. Department for Energy and Climate Change; ‘Juan de la Cierva ‐ Incorporación’ postdoctoral grant; Irish Research Council, Grant/Award Number: GOIPD/2015/81 ; DECC; Goethe International Postdoctoral Programme, People Programme (Marie Curie Actions) of the European Union's Seventh Framework Programme FP7/2007‐2013/ under REA grant agreement no [291776]; German Aerospace Center Award, Grant/Award Number: 50JR1601; Scottish Natural Heritage; Solway Coast AONB Sustainable Development Fund; COWRIE Ltd.; Heritage Lottery Fund; Robert Bosch Stiftung; NSF Division of Biological Infrastructure Award, Grant/Award Number: 1564380; Spanish Ministry of Economy and Competitiveness, Grant/Award Number: IJCI-2014-19190; Energinet.dk; NASA Award, Grant/Award Number: NNX15AV92A; MAVA Foundation; Fundação para a Ciência e Tecnologia, Grant/Award Number: SFRH/BPD/118635/2016; National Key R&D Program of China, Grant/Award Number: 2016YFC0500406; Green Fund of the Greek Ministry of Environment

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    Global Ecology and Biogeography
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    Global Ecology and Biogeography
    Article . 2019 . Peer-reviewed
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      Global Ecology and Biogeography
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      Global Ecology and Biogeography
      Article . 2019 . Peer-reviewed
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    Authors: Pablo Lorente; Eva Aguiar; Michele Bendoni; Maristella Berta; +38 Authors

    Abstract. Due to the semi-enclosed nature of the Mediterranean Sea, natural disasters and anthropogenic activities impose stronger pressures on its coastal ecosystems than in any other sea of the world. With the aim of responding adequately to science priorities and societal challenges, littoral waters must be effectively monitored with High-Frequency radar (HFR) systems. This land-based remote sensing technology can provide, in near real-time, fine-resolution maps of the surface circulation over broad coastal areas, along with reliable directional wave and wind information. The main goal of this work is to showcase the current status of the Mediterranean HFR network and the future roadmap for orchestrated actions. Ongoing collaborative efforts and recent progress of this regional alliance are not only described but also connected with other European initiatives and global frameworks, highlighting the advantages of this cost-effective instrument for the multi-parameter monitoring of the sea state. Coordinated endeavours between HFR operators from different multi-disciplinary institutions are mandatory to reach a mature stage at both national and regional levels, striving to: i) harmonize deployment and maintenance practices; ii) standardize data, metadata and quality control procedures; iii) centralize data management, visualization and access platforms; iv) develop practical applications of societal benefit, that can be used for strategic planning and informed decision-making in the Mediterranean marine environment. Such fit-for-purpose applications can serve for search and rescue operations, safe vessel navigation, tracking of marine pollutants, the monitoring of extreme events or the investigation of transport processes and the connectivity between offshore waters and coastal ecosystems. Finally, future prospects within the Mediterranean framework are discussed along with a wealth of socio-economic, technical and scientific challenges to be faced during the implementation of this integrated HFR regional network.

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    https://os.copernicus.org/prep...
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    Ocean Science (OS)
    Other literature type . 2021
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    https://doi.org/10.5194/os-202...
    Preprint . 2021 . Peer-reviewed
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      Ocean Science (OS)
      Other literature type . 2021
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      https://doi.org/10.5194/os-202...
      Preprint . 2021 . Peer-reviewed
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    Authors: Klionsky, Daniel; Abdel-Aziz, Amal Kamal; Abdelfatah, Sara; Abdellatif, Mahmoud; +997 Authors

    In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field. Contains fulltext : 232759.pdf (Publisher’s version ) (Closed access)

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    Autophagy
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    Autophagy
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    HAL - UPEC / UPEM
    Article . 2021
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    Apollo
    Article . 2021
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    Authors: Maria Vittoria Modica; Rafi Ahmad; Stuart Ainsworth; Gregor Anderluh; +19 Authors

    Venom research is a highly multidisciplinary field that involves multiple subfields of biology, informatics, pharmacology, medicine, and other areas. These different research facets are often technologically challenging and pursued by different teams lacking connection with each other. This lack of coordination hampers the full development of venom investigation and applications. The COST Action CA19144-European Venom Network was recently launched to promote synergistic interactions among different stakeholders and foster venom research at the European level. The authors acknowledge support from the European Cooperation in Science and Technology (COST) through the Action CA19144 EUVEN. European Cooperation in Science and Technology (COST) [CA19144 EUVEN]

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    Serveur académique lausannois
    Article . 2021
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      Lirias
      Article . 2021
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      Serveur académique lausannois
      Article . 2021
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    Authors: Ivan Jarić; Céline Bellard; Ricardo A. Correia; Franck Courchamp; +14 Authors

    Conservation culturomics focuses on the study of human interactions with nature through the quantitativeanalysis of voluminous digital data to aid conservation We examined the state of the art of invasion culturomics and iEcology, explored potential applications for invasive species research and management, and considered future challenges and developments in these areas. Major applications of conservation culturomics and iEcology relevant to biological invasions include analysis of internet search activity and social media to gauge societal awareness and effects of information dissemination and management, use of sentiment analysis to study societal attitudes toward invasive alien species and their management, use of digital media for taxonomic identification and early warning of invasive alien species introductions, assessment of geotagged digital media to map and monitor distribution, spread, and impact of invasive alien species, and analysis of digital media to study their life history, phenology, and novel biotic interactions.

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    Conservation Biology; Oxford University Research Archive
    Other literature type . Article . 2021 . Peer-reviewed
    License: Wiley Online Library User Agreement
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    Authors: Tintoré, Joaquín; Pinardi, Nadia; Álvarez-Fanjul, Enrique; Aguiar, Eva; +104 Authors

    The Mediterranean community represented in this paper is the result of more than 30 years of EU and nationally funded coordination, which has led to key contributions in science concepts and operational initiatives. Together with the establishment of operational services, the community has coordinated with universities, research centers, research infrastructures and private companies to implement advanced multi-platform and integrated observing and forecasting systems that facilitate the advancement of operational services, scientific achievements and mission-oriented innovation. Thus, the community can respond to societal challenges and stakeholders needs, developing a variety of fit-for-purpose services such as the Copernicus Marine Service. The combination of state-of-the-art observations and forecasting provides new opportunities for downstreamservices in response to the needs of the heavily populatedMediterranean coastal areas and to climate change. The challenge over the next decade is to sustain ocean observations within the research community, to monitor the variability at small scales, e.g., the mesoscale/submesoscale, to resolve the sub-basin/seasonal and inter-annual variability in the circulation, and thus establish the decadal variability, understand and correct the model-associated biases and to enhance model-data integration and ensemble forecasting for uncertainty estimation. Better knowledge and understanding of the level ofMediterranean variability will enable a subsequent evaluation of the impacts and mitigation of the effect of human activities and climate change on the biodiversity and the ecosystem, which will support environmental assessments and decisions. Further challenges include extending the science-based added-value products into societal relevant downstream services and engaging with communities to build initiatives that will contribute to the 2030 Agenda and more specifically to SDG14 and the UN’s Decade of Ocean Science for sustainable development, by this contributing to bridge the science-policy gap. The Mediterranean observing and forecasting capacity was built on the basis of community best practices in monitoring and modeling, and can serve as a basis for the development of an integrated global ocean observing system. Este artículo contiene 30 páginas, 14 figuras. Peer reviewed

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    OceanRep
    Article . 2019 . Peer-reviewed
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    Article . 2019
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    OAR@UM
    Article . 2019 . Peer-reviewed
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    UPCommons. Portal del coneixement obert de la UPC
    Other literature type . Article . 2019 . Peer-reviewed
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    Frontiers in Marine Science
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    Article . Other ORP type . 2019
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    Article . 2019
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      OceanRep
      Article . 2019 . Peer-reviewed
      Data sources: OceanRep
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      CNR ExploRA
      Article . 2019
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      Article . 2019
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      OAR@UM
      Article . 2019 . Peer-reviewed
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      UPCommons. Portal del coneixement obert de la UPC
      Other literature type . Article . 2019 . Peer-reviewed
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      Frontiers in Marine Science
      Article
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      ENEA Open Archive
      Article . Other ORP type . 2019
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      DOAJ
      Article . 2019
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    Authors: Gerald Langer; Alison Taylor; Charlotte E. Walker; Erin M. Meyer; +6 Authors

    SummaryThe development of calcification by the coccolithophores had a profound impact on ocean carbon cycling, but the evolutionary steps leading to the formation of these complex biomineralized structures are not clear. Heterococcoliths consisting of intricately shaped calcite crystals are formed intracellularly by the diploid life cycle phase. Holococcoliths consisting of simple rhombic crystals can be produced by the haploid life cycle stage but are thought to be formed extracellularly, representing an independent evolutionary origin of calcification.We use advanced microscopy techniques to determine the nature of coccolith formation and complex crystal formation in coccolithophore life cycle stages.We find that holococcoliths are formed in intracellular compartments in a similar manner to heterococcoliths. However, we show that silicon is not required for holococcolith formation and that the requirement for silicon in certain coccolithophore species relates specifically to the process of crystal morphogenesis in heterococcoliths.We therefore propose an evolutionary scheme in which the lower complexity holococcoliths represent an ancestral form of calcification in coccolithophores. The subsequent recruitment of a silicon‐dependent mechanism for crystal morphogenesis in the diploid life cycle stage led to the emergence of the intricately shaped heterococcoliths, enabling the formation of the elaborate coccospheres that underpin the ecological success of coccolithophores.

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    New Phytologist
    Article . 2021 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
    New Phytologist
    Article . 2020
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      New Phytologist
      Article . 2021 . Peer-reviewed
      License: CC BY
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      Article . 2020
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    Authors: Nathalie Hilmi; Denis Allemand; Sam Dupont; Alain Safa; +12 Authors

    Ocean acidification is increasingly recognized as a component of global change that could have a wide range of impacts on marine organisms, the ecosystems they live in, and the goods and services they provide humankind. Assessment of these potential socio-economic impacts requires integrated efforts between biologists, chemists, oceanographers, economists and social scientists. But because ocean acidification is a new research area, significant knowledge gaps are preventing economists from estimating its welfare impacts. For instance, economic data on the impact of ocean acidification on significant markets such as fisheries, aquaculture and tourism are very limited (if not non-existent), and non-market valuation studies on this topic are not yet available. Our paper summarizes the current understanding of future OA impacts and sets out what further information is required for economists to assess socio-economic impacts of ocean acidification. Our aim is to provide clear directions for multidisciplinary collaborative research. Electronic supplementary material The online version of this article (doi:10.1007/s00227-012-2031-5) contains supplementary material, which is available to authorized users.

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    Marine Biology
    Article
    License: CC BY
    Data sources: UnpayWall
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    Oskar Bordeaux
    Article . 2013
    License: CC BY
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    Authors: Stéphanie Jacquet; Claire Garros; Eric Lombaert; Catherine Walton; +36 Authors

    AbstractUnderstanding the demographic history and genetic make‐up of colonizing species is critical for inferring population sources and colonization routes. This is of main interest for designing accurate control measures in areas newly colonized by vector species of economically important pathogens. The biting midge Culicoides imicola is a major vector of orbiviruses to livestock. Historically, the distribution of this species was limited to the Afrotropical region. Entomological surveys first revealed the presence of C. imicola in the south of the Mediterranean basin by the 1970s. Following recurrent reports of massive bluetongue outbreaks since the 1990s, the presence of the species was confirmed in northern areas. In this study, we addressed the chronology and processes of C. imicola colonization in the Mediterranean basin. We characterized the genetic structure of its populations across Mediterranean and African regions using both mitochondrial and nuclear markers, and combined phylogeographical analyses with population genetics and approximate Bayesian computation. We found a west/east genetic differentiation between populations, occurring both within Africa and within the Mediterranean basin. We demonstrated that three of these groups had experienced demographic expansions in the Pleistocene, probably because of climate changes during this period. Finally, we showed that C. imicola could have colonized the Mediterranean basin in the Late Pleistocene or Early Holocene through a single event of introduction; however, we cannot exclude the hypothesis involving two routes of colonization. Thus, the recent bluetongue outbreaks are not linked to C. imicola colonization event, but rather to biological changes in the vector or the virus.

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    Molecular Ecology
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Molecular Ecology
    Other literature type . Article . 2015 . Peer-reviewed
    License: Wiley Online Library User Agreement
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    Authors: Moore, C.; Mills, M.; Arrigo, K.; Berman-Frank, I.; +19 Authors

    Microbial activity is a fundamental component of oceanic nutrient cycles. Photosynthetic microbes, collectively termed phytoplankton, are responsible for the vast majority of primary production in marine waters. The availability of nutrients in the upper ocean frequently limits the activity and abundance of these organisms. Experimental data have revealed two broad regimes of phytoplankton nutrient limitation in the modern upper ocean. Nitrogen availability tends to limit productivity throughout much of the surface low-latitude ocean, where the supply of nutrients from the subsurface is relatively slow. In contrast, iron often limits productivity where subsurface nutrient supply is enhanced, including within the main oceanic upwelling regions of the Southern Ocean and the eastern equatorial Pacific. Phosphorus, vitamins and micronutrients other than iron may also (co-)limit marine phytoplankton. The spatial patterns and importance of co-limitation, however, remain unclear. Variability in the stoichiometries of nutrient supply and biological demand are key determinants of oceanic nutrient limitation. Deciphering the mechanisms that underpin this variability, and the consequences for marine microbes, will be a challenge. But such knowledge will be crucial for accurately predicting the consequences of ongoing anthropogenic perturbations to oceanic nutrient biogeochemistry. © 2013 Macmillan Publishers Limited. All rights reserved.

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    Oskar Bordeaux
    Article . 2013
    Data sources: Oskar Bordeaux
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    Nature Geoscience
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Nature Geoscience
    Article . 2013 . Peer-reviewed
    License: Springer TDM
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    https://doi.org/10.7892/boris....
    Other literature type . 2013
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    Hal-Diderot
    Article . 2013
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Oskar Bordeauxarrow_drop_down
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      Oskar Bordeaux
      Article . 2013
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      Nature Geoscience
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      Nature Geoscience
      Article . 2013 . Peer-reviewed
      License: Springer TDM
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      https://doi.org/10.7892/boris....
      Other literature type . 2013
      Data sources: Datacite
      Hal-Diderot
      Article . 2013
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    Authors: Marlee A. Tucker; Olga Alexandrou; Richard O. Bierregaard; Keith L. Bildstein; +62 Authors

    Aim: Animal movement is an important determinant of individual survival, population dynamics and ecosystem structure and function. Nonetheless, it is still unclear how local movements are related to resource availability and the spatial arrangement of resources. Using resident bird species and migratory bird species outside the migratory period, we examined how the distribution of resources affects the movement patterns of both large terrestrial birds (e.g., raptors, bustards and hornbills) and waterbirds (e.g., cranes, storks, ducks, geese and flamingos). Location: Global. Time period: 2003–2015. Major taxa studied: Birds. Methods: We compiled GPS tracking data for 386 individuals across 36 bird species. We calculated the straight‐line distance between GPS locations of each individual at the 1‐hr and 10‐day time‐scales. For each individual and time‐scale, we calculated the median and 0.95 quantile of displacement. We used linear mixed‐effects models to examine the effect of the spatial arrangement of resources, measured as enhanced vegetation index homogeneity, on avian movements, while accounting for mean resource availability, body mass, diet, flight type, migratory status and taxonomy and spatial autocorrelation. Results: We found a significant effect of resource spatial arrangement at the 1‐hr and 10‐day time‐scales. On average, individual movements were seven times longer in environments with homogeneously distributed resources compared with areas of low resource homogeneity. Contrary to previous work, we found no significant effect of resource availability, diet, flight type, migratory status or body mass on the non‐migratory movements of birds. Main conclusions: We suggest that longer movements in homogeneous environments might reflect the need for different habitat types associated with foraging and reproduction. This highlights the importance of landscape complementarity, where habitat patches within a landscape include a range of different, yet complementary resources. As habitat homogenization increases, it might force birds to travel increasingly longer distances to meet their diverse needs. National Trust for Scotland; Penguin Foundation; The U.S. Department of Energy, Grant/Award Number: DE-EE0005362; Australian Research Council; NASA's Arctic Boreal Vulnerability Experiment (ABoVE), Grant/Award Number: NNX15AV92A; Netherlands Organization for Scientific Research, Grant/Award Number: VIDI 864.10.006; BCC; NSF Award, Grant/Award Number: ABI-1458748; U.K. Department for Energy and Climate Change; ‘Juan de la Cierva ‐ Incorporación’ postdoctoral grant; Irish Research Council, Grant/Award Number: GOIPD/2015/81 ; DECC; Goethe International Postdoctoral Programme, People Programme (Marie Curie Actions) of the European Union's Seventh Framework Programme FP7/2007‐2013/ under REA grant agreement no [291776]; German Aerospace Center Award, Grant/Award Number: 50JR1601; Scottish Natural Heritage; Solway Coast AONB Sustainable Development Fund; COWRIE Ltd.; Heritage Lottery Fund; Robert Bosch Stiftung; NSF Division of Biological Infrastructure Award, Grant/Award Number: 1564380; Spanish Ministry of Economy and Competitiveness, Grant/Award Number: IJCI-2014-19190; Energinet.dk; NASA Award, Grant/Award Number: NNX15AV92A; MAVA Foundation; Fundação para a Ciência e Tecnologia, Grant/Award Number: SFRH/BPD/118635/2016; National Key R&D Program of China, Grant/Award Number: 2016YFC0500406; Green Fund of the Greek Ministry of Environment

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    Global Ecology and Biogeography
    Article
    License: publisher-specific, author manuscript
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    Global Ecology and Biogeography
    Article . 2019 . Peer-reviewed
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      Global Ecology and Biogeography
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      Global Ecology and Biogeography
      Article . 2019 . Peer-reviewed
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    Authors: Pablo Lorente; Eva Aguiar; Michele Bendoni; Maristella Berta; +38 Authors

    Abstract. Due to the semi-enclosed nature of the Mediterranean Sea, natural disasters and anthropogenic activities impose stronger pressures on its coastal ecosystems than in any other sea of the world. With the aim of responding adequately to science priorities and societal challenges, littoral waters must be effectively monitored with High-Frequency radar (HFR) systems. This land-based remote sensing technology can provide, in near real-time, fine-resolution maps of the surface circulation over broad coastal areas, along with reliable directional wave and wind information. The main goal of this work is to showcase the current status of the Mediterranean HFR network and the future roadmap for orchestrated actions. Ongoing collaborative efforts and recent progress of this regional alliance are not only described but also connected with other European initiatives and global frameworks, highlighting the advantages of this cost-effective instrument for the multi-parameter monitoring of the sea state. Coordinated endeavours between HFR operators from different multi-disciplinary institutions are mandatory to reach a mature stage at both national and regional levels, striving to: i) harmonize deployment and maintenance practices; ii) standardize data, metadata and quality control procedures; iii) centralize data management, visualization and access platforms; iv) develop practical applications of societal benefit, that can be used for strategic planning and informed decision-making in the Mediterranean marine environment. Such fit-for-purpose applications can serve for search and rescue operations, safe vessel navigation, tracking of marine pollutants, the monitoring of extreme events or the investigation of transport processes and the connectivity between offshore waters and coastal ecosystems. Finally, future prospects within the Mediterranean framework are discussed along with a wealth of socio-economic, technical and scientific challenges to be faced during the implementation of this integrated HFR regional network.

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    https://os.copernicus.org/prep...
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    Ocean Science (OS)
    Other literature type . 2021
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    https://doi.org/10.5194/os-202...
    Preprint . 2021 . Peer-reviewed
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      Ocean Science (OS)
      Other literature type . 2021
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      https://doi.org/10.5194/os-202...
      Preprint . 2021 . Peer-reviewed
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    Authors: Klionsky, Daniel; Abdel-Aziz, Amal Kamal; Abdelfatah, Sara; Abdellatif, Mahmoud; +997 Authors

    In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field. Contains fulltext : 232759.pdf (Publisher’s version ) (Closed access)

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    Autophagy
    Article
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    Apollo
    Other literature type . 2021
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    Lille Open Archive
    Article . 2021
    Data sources: Lille Open Archive
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    Autophagy
    Other literature type . 2021
    Data sources: NARCIS
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    Radboud Repository
    Article . 2021
    Data sources: Radboud Repository
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    NARCIS
    Article . 2021
    Data sources: NARCIS
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    DZNE Pub
    Article . 2021
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    Autophagy
    Article . 2021
    Data sources: NARCIS
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    HAL - UPEC / UPEM
    Article . 2021
    Data sources: HAL - UPEC / UPEM
    Apollo
    Article . 2021
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    Authors: Maria Vittoria Modica; Rafi Ahmad; Stuart Ainsworth; Gregor Anderluh; +19 Authors

    Venom research is a highly multidisciplinary field that involves multiple subfields of biology, informatics, pharmacology, medicine, and other areas. These different research facets are often technologically challenging and pursued by different teams lacking connection with each other. This lack of coordination hampers the full development of venom investigation and applications. The COST Action CA19144-European Venom Network was recently launched to promote synergistic interactions among different stakeholders and foster venom research at the European level. The authors acknowledge support from the European Cooperation in Science and Technology (COST) through the Action CA19144 EUVEN. European Cooperation in Science and Technology (COST) [CA19144 EUVEN]

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    Serveur académique lausannois
    Article . 2021
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      Serveur académique lausannois
      Article . 2021
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    Authors: Ivan Jarić; Céline Bellard; Ricardo A. Correia; Franck Courchamp; +14 Authors

    Conservation culturomics focuses on the study of human interactions with nature through the quantitativeanalysis of voluminous digital data to aid conservation We examined the state of the art of invasion culturomics and iEcology, explored potential applications for invasive species research and management, and considered future challenges and developments in these areas. Major applications of conservation culturomics and iEcology relevant to biological invasions include analysis of internet search activity and social media to gauge societal awareness and effects of information dissemination and management, use of sentiment analysis to study societal attitudes toward invasive alien species and their management, use of digital media for taxonomic identification and early warning of invasive alien species introductions, assessment of geotagged digital media to map and monitor distribution, spread, and impact of invasive alien species, and analysis of digital media to study their life history, phenology, and novel biotic interactions.

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    Conservation Biology; Oxford University Research Archive
    Other literature type . Article . 2021 . Peer-reviewed
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    Authors: Tintoré, Joaquín; Pinardi, Nadia; Álvarez-Fanjul, Enrique; Aguiar, Eva; +104 Authors

    The Mediterranean community represented in this paper is the result of more than 30 years of EU and nationally funded coordination, which has led to key contributions in science concepts and operational initiatives. Together with the establishment of operational services, the community has coordinated with universities, research centers, research infrastructures and private companies to implement advanced multi-platform and integrated observing and forecasting systems that facilitate the advancement of operational services, scientific achievements and mission-oriented innovation. Thus, the community can respond to societal challenges and stakeholders needs, developing a variety of fit-for-purpose services such as the Copernicus Marine Service. The combination of state-of-the-art observations and forecasting provides new opportunities for downstreamservices in response to the needs of the heavily populatedMediterranean coastal areas and to climate change. The challenge over the next decade is to sustain ocean observations within the research community, to monitor the variability at small scales, e.g., the mesoscale/submesoscale, to resolve the sub-basin/seasonal and inter-annual variability in the circulation, and thus establish the decadal variability, understand and correct the model-associated biases and to enhance model-data integration and ensemble forecasting for uncertainty estimation. Better knowledge and understanding of the level ofMediterranean variability will enable a subsequent evaluation of the impacts and mitigation of the effect of human activities and climate change on the biodiversity and the ecosystem, which will support environmental assessments and decisions. Further challenges include extending the science-based added-value products into societal relevant downstream services and engaging with communities to build initiatives that will contribute to the 2030 Agenda and more specifically to SDG14 and the UN’s Decade of Ocean Science for sustainable development, by this contributing to bridge the science-policy gap. The Mediterranean observing and forecasting capacity was built on the basis of community best practices in monitoring and modeling, and can serve as a basis for the development of an integrated global ocean observing system. Este artículo contiene 30 páginas, 14 figuras. Peer reviewed

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    UPCommons. Portal del coneixement obert de la UPC
    Other literature type . Article . 2019 . Peer-reviewed
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    Frontiers in Marine Science
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      CNR ExploRA
      Article . 2019
      Data sources: CNR ExploRA
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      ENEA Open Archive
      Article . 2019
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      OAR@UM
      Article . 2019 . Peer-reviewed
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      Other literature type . Article . 2019 . Peer-reviewed
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      Frontiers in Marine Science
      Article
      License: CC BY
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      ENEA Open Archive
      Article . Other ORP type . 2019
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      DOAJ
      Article . 2019
      Data sources: DOAJ
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    Authors: Gerald Langer; Alison Taylor; Charlotte E. Walker; Erin M. Meyer; +6 Authors

    SummaryThe development of calcification by the coccolithophores had a profound impact on ocean carbon cycling, but the evolutionary steps leading to the formation of these complex biomineralized structures are not clear. Heterococcoliths consisting of intricately shaped calcite crystals are formed intracellularly by the diploid life cycle phase. Holococcoliths consisting of simple rhombic crystals can be produced by the haploid life cycle stage but are thought to be formed extracellularly, representing an independent evolutionary origin of calcification.We use advanced microscopy techniques to determine the nature of coccolith formation and complex crystal formation in coccolithophore life cycle stages.We find that holococcoliths are formed in intracellular compartments in a similar manner to heterococcoliths. However, we show that silicon is not required for holococcolith formation and that the requirement for silicon in certain coccolithophore species relates specifically to the process of crystal morphogenesis in heterococcoliths.We therefore propose an evolutionary scheme in which the lower complexity holococcoliths represent an ancestral form of calcification in coccolithophores. The subsequent recruitment of a silicon‐dependent mechanism for crystal morphogenesis in the diploid life cycle stage led to the emergence of the intricately shaped heterococcoliths, enabling the formation of the elaborate coccospheres that underpin the ecological success of coccolithophores.

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    New Phytologist
    Article . 2021 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
    New Phytologist
    Article . 2020
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      New Phytologist
      Article . 2021 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
      New Phytologist
      Article . 2020
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    Authors: Nathalie Hilmi; Denis Allemand; Sam Dupont; Alain Safa; +12 Authors

    Ocean acidification is increasingly recognized as a component of global change that could have a wide range of impacts on marine organisms, the ecosystems they live in, and the goods and services they provide humankind. Assessment of these potential socio-economic impacts requires integrated efforts between biologists, chemists, oceanographers, economists and social scientists. But because ocean acidification is a new research area, significant knowledge gaps are preventing economists from estimating its welfare impacts. For instance, economic data on the impact of ocean acidification on significant markets such as fisheries, aquaculture and tourism are very limited (if not non-existent), and non-market valuation studies on this topic are not yet available. Our paper summarizes the current understanding of future OA impacts and sets out what further information is required for economists to assess socio-economic impacts of ocean acidification. Our aim is to provide clear directions for multidisciplinary collaborative research. Electronic supplementary material The online version of this article (doi:10.1007/s00227-012-2031-5) contains supplementary material, which is available to authorized users.

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    Marine Biology
    Article
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    Data sources: UnpayWall
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    Oskar Bordeaux
    Article . 2013
    License: CC BY
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