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integration_instructions Research softwarekeyboard_double_arrow_right Software 2022 EnglishPublisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +15 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| RISIS 2 ,EC| IMARINE ,EC| EGI-Engage ,EC| D4SCIENCE-II ,EC| PARTHENOS ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| EOSC-Pillar ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| SoBigData-PlusPlus ,EC| DESIRA ,EC| Blue Cloud ,EC| SoBigDataAuthors: Frosini, Luca;Frosini, Luca;gCube Catalogue (gCat) Client is a library designed to interact with REST API exposed by the gCat Service. gCube is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the D4Science Infrastructure, by favouring the realisation of reuse-oriented policies. gCube has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage. gCube offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data. D4Science is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube. The source code of this software version is available at: https://code-repo.d4science.org/gCubeSystem/gcat-client/releases/tag/v2.4.0
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You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.7447661&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 50visibility views 50 download downloads 3 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.7447661&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Report 2022 Italy English Funded by:FCT | D4, EC | TAILOR, EC | EOSC Future +16 projectsFCT| D4 ,EC| TAILOR ,EC| EOSC Future ,EC| Skills4EOSC ,EC| EOSC-Pillar ,EC| FAIRCORE4EOSC ,EC| PARTHENOS ,EC| SoBigData-PlusPlus ,EC| ARIADNEplus ,EC| SoBigData RI PPP ,EC| I-GENE ,EC| DESIRA ,EC| RISIS 2 ,EC| MOVING ,EC| OpenAIRE Nexus ,EC| PerformFISH ,EC| CODECS ,EC| Blue Cloud ,EC| EcoScopeArtini M.; Assante M.; Atzori C.; Baglioni M.; Bardi A.; Bove P.; Candela L.; Casini G.; Castelli D.; Cirillo R.; Coro G.; De Bonis M.; Debole F.; Dell'Amico A.; Frosini L.; La Bruzzo S.; Lelii L.; Manghi P.; Mangiacrapa F.; Mangione D.; Mannocci A.; Ottonello E.; Pagano P.; Panichi G.; Pavone G.; Piccioli T.; Sinibaldi F.; Straccia U.; Zoppi F.;InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2022 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2022 InfraScience members contributed to the publishing of several papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=od______9984::e8ee90c276dff7547c5cf21398379a9c&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | D4SCIENCE-II, EC | SoBigData, EC | EGI-Engage +15 projectsEC| D4SCIENCE-II ,EC| SoBigData ,EC| EGI-Engage ,EC| PARTHENOS ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| EOSC-Pillar ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| IMARINE ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| SoBigData-PlusPlus ,EC| RISIS 2 ,EC| DESIRA ,EC| Blue CloudAuthors: Frosini, Luca;Frosini, Luca;gCube Catalogue (gCat) API is a library containing classes shared across gcat* components. gCube is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the D4Science Infrastructure, by favouring the realisation of reuse-oriented policies. gCube has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage. gCube offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data. D4Science is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube. The source code of this software version is available at: https://code-repo.d4science.org/gCubeSystem/gcat-api/releases/tag/v2.3.0
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You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.7446432&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 83visibility views 83 download downloads 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.7446432&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +15 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| IMARINE ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| EGI-Engage ,EC| EOSC-Pillar ,EC| RISIS 2 ,EC| D4SCIENCE-II ,EC| SoBigData ,EC| PARTHENOS ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| SoBigData-PlusPlus ,EC| DESIRA ,EC| Blue CloudAuthors: Frosini, Luca;Frosini, Luca;gCube Catalogue (gCat) Service allows any client to publish on the gCube Catalogue. gCube is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the D4Science Infrastructure, by favouring the realisation of reuse-oriented policies. gCube has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage. gCube offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data. D4Science is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube. The source code of this software version is available at: https://code-repo.d4science.org/gCubeSystem/gcat/releases/tag/v2.4.1
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.7446642&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 63visibility views 63 download downloads 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.7446642&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | EGI-Engage, EC | D4SCIENCE-II, EC | ENVRI +12 projectsEC| EGI-Engage ,EC| D4SCIENCE-II ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| IMARINE ,EC| EUBRAZILOPENBIO ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| RISIS 2 ,EC| SoBigData ,EC| D4SCIENCE ,EC| PARTHENOS ,EC| DESIRAAuthors: Sinibaldi, Fabio;Sinibaldi, Fabio;gCube SDI is the set of engines and logic responsible of dealing with GIS data management in a gCube Infrastructure. In the image above is presented the SDI from a logic point of view : Orange components are all gCube SDI logic meant to facilitate the management of the SDI nodes and content (see #gCube Logic below), in particular : SDI-Service manages instances credentials on IS and some configuration operation on the nodes GeoServer and GeoNetwork are equipped with connectors in order to manage http(s) requests Thredds node are provisioned with a Data_Transfer_2 equipped with a dedicated How_to_use_Data_Transfer_2#Thredds_Plugin_Suite. Third party engines are exploited for their core GIS features (i.e. store/access to GIS data/metadata) The generic rationale of gCube logic is to provide : Context-oriented credential management, in order to enforce access policies to published (meta) Metadata enrichment in publication phase GIS (meta)data publication utilities NB : It is important to note that while the use of gCube logic is recommended, various use cases may directly exploit provided third party engines for various reasons (e.g. non-Java algorithms) Third Party Engines In gCube SDI, third party engines are exploited for their GIS data/metadata management, more in details we use : GeoNetwork : Store GIS ISO Metadata (xml) Expose metadata with CSW Harvest metadata GeoServer : Store GIS DATA (e.g. shp, postgis, geopackage) Expose data with WMS, WFS, WCS.. Thredds : Store GIS DATA Expose data with WMS, WFS, WCS.. Managed Credentials GeoNetwork credentials are managed by gCube org.gcube.spatial.data.geonetwork library and org.gcube.spatial.data.sdi-service SmartGear service. These credentials are generated as needed, and configured in such a way that metadata visibility between gCube contexts reflects gCube policies (more information here). GeoServer and Thredds credentials are loosely managed, meaning that only administrator user is used in order to publish data to these engines. gCube Logic During SDI evolution, distributed gCube logic evolved according to emerging needs while trying to maintain retro-compatibility. For this reason, some components may still be used while being deprecated (e.g. ws-thredds) and there is still some overlap between logic. Following list aims to provide a generic overview of provided gCube logic features by component : org.gcube.spatial.data.geonetwork Library Client for GeoNetwork service Metadata publication utilities Metadata enhancement (NB uses IS Generic Resource, more information at GeoNetwork_library#Metadata_generation_facilities) GeoNetwork credentials management (generation and retrieval) org.gcube.spatial.data.gis-interface Library Data publication utilities with contextual metadata publishing (uses org.gcube.spatial.data.geonetwork for metadata) Currently supported data engine is only GeoServer org.gcube.spatial.data.sdi-service SmartGear Service Credentials management and retrieval Metadata enhancement via template application (used in Thredds publication, see ws-thredds below) SDI configuration management Thredds Plugin Suite Data Transfer Plugins Configure catalogs in local Thredds Publish transferred dataset's metadata in VRE's GeoNewtork org.gcube.spatial.data.ws-thredds Deprecated Library Synchronize a ws-folder with a Thredds catalog, generating and publishing metadata on GeoNetwork Connectors These components are library which implement a Web Application Filter in order to : Intercept incoming http(s) requests If gcube-token is declared, then retrieve credentials from SDI Service and set them in the current request This allows for authentication within third party engines unaware of gCube logic, by using gcube-token. NB : this approach is considered obsolete and should be changed in favor of oauth integration. Available connectors are : GeoNetwork : org.gcube.data.access.geonetwork.gcube-geonetwork-connector GeoServer : org.gcube.data.access.geoserver.gcube-geoserver-connector
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 8visibility views 8 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.8087014&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +12 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| EGI-Engage ,EC| SoBigData ,EC| IMARINE ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| PARTHENOS ,EC| EUBRAZILOPENBIO ,EC| RISIS 2 ,EC| D4SCIENCE-II ,EC| D4SCIENCE ,EC| DESIRAAuthors: Fabio Sinibaldi;Fabio Sinibaldi;The org.gcube.data.publishing.ckan2Zenodo gCube component is a Java library which translates CKAN items into Zenodo depositions, allowing to further editing and publication. The library is invoked by the client (in this case the gCube CKAN GUI), which relies on the gCat service for interacting with CKAN. After the ckan item is loaded, a default translation is then applied on the item's core fields generating in a Draft Zenodo Deposition. NB If the item has already a linked Zenodo DOI, the Draft Deposition overrides its specified informations. A XML Mapping associated with item's profile, is then loaded from the IS (token must be specified by the client). The XML Mapping extracts data from the CKAN item and applies them to the Draft Deposition, resulting in a Final Deposition. The Final Deposition is then returned to the client for further editing, which can eventually ask for its publication (the new Zenodo Doi will be then applied to the CKAN item through gCat).
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.8087249&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 4visibility views 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.8087249&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019Publisher:Zenodo Funded by:EC | IMARINE, EC | PerformFISH, EC | ENVRI PLUS +12 projectsEC| IMARINE ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| RISIS 2 ,EC| SoBigData ,EC| D4SCIENCE-II ,EC| EGI-Engage ,EC| PARTHENOS ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| DESIRAAuthors: Fabio Sinibaldi;Fabio Sinibaldi;GFeed service a gCube SmartGears web application with a REST-like interface, leveraging on gCube Framework capabilities for authentication, authorization and resource discovery through the gCube IS. In order to maximize versatility and allow for extensions, it implements a plugin design patterns, delegating interaction with sources and destination to specific plugins. Such plugins implement specific Interfaces defined in a common plugin framework, that the service utilizes in order to discover available implementations and orchestrate requested execution. Gfeed aim is to enable batch information transfer between heterogeneous sources / destination. In order to do so, with each requests the users can specify which plugins to involve in the transfer, thus activating that particular source/destination in the process (Default is activate all). For each request : Data are harvested from activated sources by collector plugins Collector plugins present harvested data to the service For each activated destination ,the service asks collector plugins to transformation harvested data in proper destination data format (see Plugin Transformation Matrix) Transformed data is passed to activated controllers for publication We can summarize this behaviour by assuming all supported transformations as available data pipes from sources to destination. In such scenario, in each execution users activate this pipes as their were opening/closing related valves.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 14visibility views 14 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.8087270&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019Publisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +9 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| PARTHENOS ,EC| ENVRI ,EC| BlueBRIDGE ,EC| D4SCIENCE-II ,EC| IMARINE ,EC| EGI-Engage ,EC| SoBigData ,EC| EUBRAZILOPENBIO ,EC| D4SCIENCEAuthors: Sinibaldi, Fabio;Sinibaldi, Fabio;Service for Farm Perform Data Management Support Bugs and support requests can be reported in the gCube issue tracking tool: https://support.d4science.org/projects/gcube/ Changes in this version: First Release ────────── This software is part of the gCube Framework: an open-source software toolkit used for building and operating Hybrid Data Infrastructures. Find out more at https://www.gcube-system.org/.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 29visibility views 29 download downloads 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.3258704&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019Publisher:Zenodo Funded by:EC | BlueBRIDGE, EC | EGI-Engage, EC | PerformFISH +9 projectsEC| BlueBRIDGE ,EC| EGI-Engage ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| PARTHENOS ,EC| SoBigData ,EC| D4SCIENCE-II ,EC| IMARINE ,EC| EUBRAZILOPENBIO ,EC| D4SCIENCE ,EC| ENVRIAuthors: Massimiliano Assante;Massimiliano Assante;PerformFISH Apps is a set of portlet for the implementation of the Form Submission useful to calculate KPIs Support Bugs and support requests can be reported in the gCube issue tracking tool: https://support.d4science.org/projects/gcube/ ────────── This software is part of the gCube Framework: an open-source software toolkit used for building and operating Hybrid Data Infrastructures. Find out more at https://www.gcube-system.org/.
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You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.3258701&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 46visibility views 46 download downloads 10 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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integration_instructions Research softwarekeyboard_double_arrow_right Software 2022 EnglishPublisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +15 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| RISIS 2 ,EC| IMARINE ,EC| EGI-Engage ,EC| D4SCIENCE-II ,EC| PARTHENOS ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| EOSC-Pillar ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| SoBigData-PlusPlus ,EC| DESIRA ,EC| Blue Cloud ,EC| SoBigDataAuthors: Frosini, Luca;Frosini, Luca;gCube Catalogue (gCat) Client is a library designed to interact with REST API exposed by the gCat Service. gCube is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the D4Science Infrastructure, by favouring the realisation of reuse-oriented policies. gCube has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage. gCube offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data. D4Science is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube. The source code of this software version is available at: https://code-repo.d4science.org/gCubeSystem/gcat-client/releases/tag/v2.4.0
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 50visibility views 50 download downloads 3 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Report 2022 Italy English Funded by:FCT | D4, EC | TAILOR, EC | EOSC Future +16 projectsFCT| D4 ,EC| TAILOR ,EC| EOSC Future ,EC| Skills4EOSC ,EC| EOSC-Pillar ,EC| FAIRCORE4EOSC ,EC| PARTHENOS ,EC| SoBigData-PlusPlus ,EC| ARIADNEplus ,EC| SoBigData RI PPP ,EC| I-GENE ,EC| DESIRA ,EC| RISIS 2 ,EC| MOVING ,EC| OpenAIRE Nexus ,EC| PerformFISH ,EC| CODECS ,EC| Blue Cloud ,EC| EcoScopeArtini M.; Assante M.; Atzori C.; Baglioni M.; Bardi A.; Bove P.; Candela L.; Casini G.; Castelli D.; Cirillo R.; Coro G.; De Bonis M.; Debole F.; Dell'Amico A.; Frosini L.; La Bruzzo S.; Lelii L.; Manghi P.; Mangiacrapa F.; Mangione D.; Mannocci A.; Ottonello E.; Pagano P.; Panichi G.; Pavone G.; Piccioli T.; Sinibaldi F.; Straccia U.; Zoppi F.;InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2022 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2022 InfraScience members contributed to the publishing of several papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | D4SCIENCE-II, EC | SoBigData, EC | EGI-Engage +15 projectsEC| D4SCIENCE-II ,EC| SoBigData ,EC| EGI-Engage ,EC| PARTHENOS ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| EOSC-Pillar ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| IMARINE ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| SoBigData-PlusPlus ,EC| RISIS 2 ,EC| DESIRA ,EC| Blue CloudAuthors: Frosini, Luca;Frosini, Luca;gCube Catalogue (gCat) API is a library containing classes shared across gcat* components. gCube is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the D4Science Infrastructure, by favouring the realisation of reuse-oriented policies. gCube has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage. gCube offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data. D4Science is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube. The source code of this software version is available at: https://code-repo.d4science.org/gCubeSystem/gcat-api/releases/tag/v2.3.0
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 83visibility views 83 download downloads 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.7446432&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +15 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| IMARINE ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| EGI-Engage ,EC| EOSC-Pillar ,EC| RISIS 2 ,EC| D4SCIENCE-II ,EC| SoBigData ,EC| PARTHENOS ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| SoBigData-PlusPlus ,EC| DESIRA ,EC| Blue CloudAuthors: Frosini, Luca;Frosini, Luca;gCube Catalogue (gCat) Service allows any client to publish on the gCube Catalogue. gCube is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the D4Science Infrastructure, by favouring the realisation of reuse-oriented policies. gCube has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage. gCube offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data. D4Science is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube. The source code of this software version is available at: https://code-repo.d4science.org/gCubeSystem/gcat/releases/tag/v2.4.1
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 63visibility views 63 download downloads 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | EGI-Engage, EC | D4SCIENCE-II, EC | ENVRI +12 projectsEC| EGI-Engage ,EC| D4SCIENCE-II ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| IMARINE ,EC| EUBRAZILOPENBIO ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| RISIS 2 ,EC| SoBigData ,EC| D4SCIENCE ,EC| PARTHENOS ,EC| DESIRAAuthors: Sinibaldi, Fabio;Sinibaldi, Fabio;gCube SDI is the set of engines and logic responsible of dealing with GIS data management in a gCube Infrastructure. In the image above is presented the SDI from a logic point of view : Orange components are all gCube SDI logic meant to facilitate the management of the SDI nodes and content (see #gCube Logic below), in particular : SDI-Service manages instances credentials on IS and some configuration operation on the nodes GeoServer and GeoNetwork are equipped with connectors in order to manage http(s) requests Thredds node are provisioned with a Data_Transfer_2 equipped with a dedicated How_to_use_Data_Transfer_2#Thredds_Plugin_Suite. Third party engines are exploited for their core GIS features (i.e. store/access to GIS data/metadata) The generic rationale of gCube logic is to provide : Context-oriented credential management, in order to enforce access policies to published (meta) Metadata enrichment in publication phase GIS (meta)data publication utilities NB : It is important to note that while the use of gCube logic is recommended, various use cases may directly exploit provided third party engines for various reasons (e.g. non-Java algorithms) Third Party Engines In gCube SDI, third party engines are exploited for their GIS data/metadata management, more in details we use : GeoNetwork : Store GIS ISO Metadata (xml) Expose metadata with CSW Harvest metadata GeoServer : Store GIS DATA (e.g. shp, postgis, geopackage) Expose data with WMS, WFS, WCS.. Thredds : Store GIS DATA Expose data with WMS, WFS, WCS.. Managed Credentials GeoNetwork credentials are managed by gCube org.gcube.spatial.data.geonetwork library and org.gcube.spatial.data.sdi-service SmartGear service. These credentials are generated as needed, and configured in such a way that metadata visibility between gCube contexts reflects gCube policies (more information here). GeoServer and Thredds credentials are loosely managed, meaning that only administrator user is used in order to publish data to these engines. gCube Logic During SDI evolution, distributed gCube logic evolved according to emerging needs while trying to maintain retro-compatibility. For this reason, some components may still be used while being deprecated (e.g. ws-thredds) and there is still some overlap between logic. Following list aims to provide a generic overview of provided gCube logic features by component : org.gcube.spatial.data.geonetwork Library Client for GeoNetwork service Metadata publication utilities Metadata enhancement (NB uses IS Generic Resource, more information at GeoNetwork_library#Metadata_generation_facilities) GeoNetwork credentials management (generation and retrieval) org.gcube.spatial.data.gis-interface Library Data publication utilities with contextual metadata publishing (uses org.gcube.spatial.data.geonetwork for metadata) Currently supported data engine is only GeoServer org.gcube.spatial.data.sdi-service SmartGear Service Credentials management and retrieval Metadata enhancement via template application (used in Thredds publication, see ws-thredds below) SDI configuration management Thredds Plugin Suite Data Transfer Plugins Configure catalogs in local Thredds Publish transferred dataset's metadata in VRE's GeoNewtork org.gcube.spatial.data.ws-thredds Deprecated Library Synchronize a ws-folder with a Thredds catalog, generating and publishing metadata on GeoNetwork Connectors These components are library which implement a Web Application Filter in order to : Intercept incoming http(s) requests If gcube-token is declared, then retrieve credentials from SDI Service and set them in the current request This allows for authentication within third party engines unaware of gCube logic, by using gcube-token. NB : this approach is considered obsolete and should be changed in favor of oauth integration. Available connectors are : GeoNetwork : org.gcube.data.access.geonetwork.gcube-geonetwork-connector GeoServer : org.gcube.data.access.geoserver.gcube-geoserver-connector
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 8visibility views 8 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishPublisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +12 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| EGI-Engage ,EC| SoBigData ,EC| IMARINE ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| PARTHENOS ,EC| EUBRAZILOPENBIO ,EC| RISIS 2 ,EC| D4SCIENCE-II ,EC| D4SCIENCE ,EC| DESIRAAuthors: Fabio Sinibaldi;Fabio Sinibaldi;The org.gcube.data.publishing.ckan2Zenodo gCube component is a Java library which translates CKAN items into Zenodo depositions, allowing to further editing and publication. The library is invoked by the client (in this case the gCube CKAN GUI), which relies on the gCat service for interacting with CKAN. After the ckan item is loaded, a default translation is then applied on the item's core fields generating in a Draft Zenodo Deposition. NB If the item has already a linked Zenodo DOI, the Draft Deposition overrides its specified informations. A XML Mapping associated with item's profile, is then loaded from the IS (token must be specified by the client). The XML Mapping extracts data from the CKAN item and applies them to the Draft Deposition, resulting in a Final Deposition. The Final Deposition is then returned to the client for further editing, which can eventually ask for its publication (the new Zenodo Doi will be then applied to the CKAN item through gCat).
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 4visibility views 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.8087249&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019Publisher:Zenodo Funded by:EC | IMARINE, EC | PerformFISH, EC | ENVRI PLUS +12 projectsEC| IMARINE ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| ENVRI ,EC| ARIADNEplus ,EC| BlueBRIDGE ,EC| RISIS 2 ,EC| SoBigData ,EC| D4SCIENCE-II ,EC| EGI-Engage ,EC| PARTHENOS ,EC| D4SCIENCE ,EC| EUBRAZILOPENBIO ,EC| DESIRAAuthors: Fabio Sinibaldi;Fabio Sinibaldi;GFeed service a gCube SmartGears web application with a REST-like interface, leveraging on gCube Framework capabilities for authentication, authorization and resource discovery through the gCube IS. In order to maximize versatility and allow for extensions, it implements a plugin design patterns, delegating interaction with sources and destination to specific plugins. Such plugins implement specific Interfaces defined in a common plugin framework, that the service utilizes in order to discover available implementations and orchestrate requested execution. Gfeed aim is to enable batch information transfer between heterogeneous sources / destination. In order to do so, with each requests the users can specify which plugins to involve in the transfer, thus activating that particular source/destination in the process (Default is activate all). For each request : Data are harvested from activated sources by collector plugins Collector plugins present harvested data to the service For each activated destination ,the service asks collector plugins to transformation harvested data in proper destination data format (see Plugin Transformation Matrix) Transformed data is passed to activated controllers for publication We can summarize this behaviour by assuming all supported transformations as available data pipes from sources to destination. In such scenario, in each execution users activate this pipes as their were opening/closing related valves.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 14visibility views 14 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019Publisher:Zenodo Funded by:EC | PerformFISH, EC | ENVRI PLUS, EC | AGINFRA PLUS +9 projectsEC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| PARTHENOS ,EC| ENVRI ,EC| BlueBRIDGE ,EC| D4SCIENCE-II ,EC| IMARINE ,EC| EGI-Engage ,EC| SoBigData ,EC| EUBRAZILOPENBIO ,EC| D4SCIENCEAuthors: Sinibaldi, Fabio;Sinibaldi, Fabio;Service for Farm Perform Data Management Support Bugs and support requests can be reported in the gCube issue tracking tool: https://support.d4science.org/projects/gcube/ Changes in this version: First Release ────────── This software is part of the gCube Framework: an open-source software toolkit used for building and operating Hybrid Data Infrastructures. Find out more at https://www.gcube-system.org/.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 29visibility views 29 download downloads 4 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.3258704&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019Publisher:Zenodo Funded by:EC | BlueBRIDGE, EC | EGI-Engage, EC | PerformFISH +9 projectsEC| BlueBRIDGE ,EC| EGI-Engage ,EC| PerformFISH ,EC| ENVRI PLUS ,EC| AGINFRA PLUS ,EC| PARTHENOS ,EC| SoBigData ,EC| D4SCIENCE-II ,EC| IMARINE ,EC| EUBRAZILOPENBIO ,EC| D4SCIENCE ,EC| ENVRIAuthors: Massimiliano Assante;Massimiliano Assante;PerformFISH Apps is a set of portlet for the implementation of the Form Submission useful to calculate KPIs Support Bugs and support requests can be reported in the gCube issue tracking tool: https://support.d4science.org/projects/gcube/ ────────── This software is part of the gCube Framework: an open-source software toolkit used for building and operating Hybrid Data Infrastructures. Find out more at https://www.gcube-system.org/.
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You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5281/zenodo.3258701&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!visibility 46visibility views 46 download downloads 10 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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