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integration_instructions Research softwarekeyboard_double_arrow_right Software 2021 JavaScriptPublisher:bio.tools Funded by:EC | OpenBudgets.euEC| OpenBudgets.euAuthors: Klímek, Jakub; Škoda, Petr;Klímek, Jakub; Škoda, Petr;Extract Transform Load for Linked Data
All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::556c1fcae1615ebedfb5fcde449d885f&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::556c1fcae1615ebedfb5fcde449d885f&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2018Publisher:bio.tools Funded by:EC | EMBRIC, EC | INMARE, EC | ELIXIR-EXCELERATEEC| EMBRIC ,EC| INMARE ,EC| ELIXIR-EXCELERATEAuthors: Horner, David;Horner, David;A web service incorporating state of the art tools and workflows for the analysis of eDNA sequence data. Dedicated tools available in A-GAME allow efficient analysis of pooled libraries and rapid identification of candidate genes, reducing sequencing costs and saving the need for laborious manual annotation.
All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::b237d7af320f71de7115513d08103f2b&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::b237d7af320f71de7115513d08103f2b&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2018 Italy EnglishPublisher:BioMed Central Funded by:EC | EMBRIC, EC | INMARE, EC | ELIXIR-EXCELERATEEC| EMBRIC ,EC| INMARE ,EC| ELIXIR-EXCELERATEM. Chiara; A. Placido; E. Picardi; L. R. Ceci; D. S. Horner; G. Pesole;Background Expression screening of environmental DNA (eDNA) libraries is a popular approach for the identification and characterization of novel microbial enzymes with promising biotechnological properties. In such “functional metagenomics” experiments, inserts, selected on the basis of activity assays, are sequenced with high throughput sequencing technologies. Assembly is followed by gene prediction, annotation and identification of candidate genes that are subsequently evaluated for biotechnological applications. Results Here we present A-GAME (A GAlaxy suite for functional MEtagenomics), a web service incorporating state of the art tools and workflows for the analysis of eDNA sequence data. We illustrate the potential of A-GAME workflows using real functional metagenomics data, showing that they outperform alternative metagenomics assemblers. Dedicated tools available in A-GAME allow efficient analysis of pooled libraries and rapid identification of candidate genes, reducing sequencing costs and saving the need for laborious manual annotation. Conclusion In conclusion, we believe A-GAME will constitute a valuable resource for the functional metagenomics community. A-GAME is publicly available at http://beaconlab.it/agame Electronic supplementary material The online version of this article (10.1186/s12864-017-4369-z) contains supplementary material, which is available to authorized users.
BMC Genomics; Archiv... arrow_drop_down Europe PubMed CentralArticle . 2018Full-Text: http://europepmc.org/articles/PMC5767027Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=2434/549892&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 5 citations 5 popularity Average influence Average impulse Average Powered by BIP!more_vert BMC Genomics; Archiv... arrow_drop_down Europe PubMed CentralArticle . 2018Full-Text: http://europepmc.org/articles/PMC5767027Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=2434/549892&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2016 Spain, Netherlands, Germany, Germany, United Kingdom, Luxembourg, Spain, Sweden, United Kingdom, United Kingdom, United Kingdom EnglishPublisher:Springer Science and Business Media LLC Funded by:EC | BLUEPRINT, EC | SYSMEDIBD, EC | P-MEDICINE +34 projectsEC| BLUEPRINT ,EC| SYSMEDIBD ,EC| P-MEDICINE ,EC| ERA-IB-2 ,EC| PSIMEX ,EC| DECIPHER ,EC| ESGI ,EC| EPIGENESYS ,EC| MEDALL ,EC| ERASYSAPP ,EC| PREDEMICS ,EC| CASYM ,EC| EMIF ,EC| ELIXIR ,EC| MIMOMICS ,EC| TRANSLOCATION ,EC| VPH-SHARE ,EC| BRIDGES ,EC| ASTERIX ,EC| SEMCARE ,EC| IDEAL ,EC| MedBioinformatics ,EC| STATEGRA ,WT| Wellcome Trust Sanger Institute - generic account for deposition of all core- funded research papers ,EC| U-BIOPRED ,EC| ECHO ,WT ,EC| CANCER-ID ,EC| PROTEOMEXCHANGE ,EC| COMBIMS ,EC| ERASYNBIO ,EC| KConnect ,EC| READNA ,EC| PREPARE ,EC| MULTIMOD ,EC| RADIANT ,EC| CHAARMCharles Auffray; Rudi Balling; Inês Barroso; László Bencze; Mikael Benson; Jay M. Bergeron; Enrique Bernal-Delgado; Niklas Blomberg; Christoph Bock; Ana Conesa; Susanna Del Signore; Christophe Delogne; Peter Devilee; Alberto Di Meglio; Marinus J.C. Eijkemans; Paul Flicek; Norbert Graf; Vera Grimm; Henk-Jan Guchelaar; Yike Guo; Ivo Gut; Allan Hanbury; Shahid Hanif; Ralf-Dieter Hilgers; Angel Honrado; D. Rod Hose; Jeanine J. Houwing-Duistermaat; Tim Hubbard; Sophie Helen Janacek; Haralampos Karanikas; Tim Kievits; Manfred Kohler; Andreas Kremer; Jerry Lanfear; Thomas Lengauer; Edith Maes; Theo F. Meert; Werner Müller; Dörthe Nickel; Peter Oledzki; Bertrand Pedersen; Milan Petkovic; Konstantinos Pliakos; Magnus Rattray; Josep Redón Más; Reinhard Schneider; Thierry Sengstag; Xavier Serra-Picamal; Wouter Spek; Lea A. I. Vaas; Okker van Batenburg; Marc Vandelaer; Péter Várnai; Pablo Villoslada; Juan Antonio Vizcaíno; John Peter Mary Wubbe; Gianluigi Zanetti;doi: 10.1186/s13073-016-0323-y , 10.1186/s13073-016-0376-y , 10.18154/rwth-conv-213156 , 10.17863/cam.42076 , 10.18154/rwth-conv-213157
handle: 11858/00-001M-0000-002C-1D02-C , 11858/00-001M-0000-002C-1D04-8 , 1887/99384 , 11858/00-001M-0000-002A-F90A-4 , 11858/00-001M-0000-002A-F908-8 , 1874/337769
pmc: PMC5100330 , PMC4919856
doi: 10.1186/s13073-016-0323-y , 10.1186/s13073-016-0376-y , 10.18154/rwth-conv-213156 , 10.17863/cam.42076 , 10.18154/rwth-conv-213157
handle: 11858/00-001M-0000-002C-1D02-C , 11858/00-001M-0000-002C-1D04-8 , 1887/99384 , 11858/00-001M-0000-002A-F90A-4 , 11858/00-001M-0000-002A-F908-8 , 1874/337769
pmc: PMC5100330 , PMC4919856
Medicine and healthcare are undergoing profound changes. Whole-genome sequencing and high-resolution imaging technologies are key drivers of this rapid and crucial transformation. Technological innovation combined with automation and miniaturization has triggered an explosion in data production that will soon reach exabyte proportions. How are we going to deal with this exponential increase in data production? The potential of "big data" for improving health is enormous but, at the same time, we face a wide range of challenges to overcome urgently. Europe is very proud of its cultural diversity; however, exploitation of the data made available through advances in genomic medicine, imaging, and a wide range of mobile health applications or connected devices is hampered by numerous historical, technical, legal, and political barriers. European health systems and databases are diverse and fragmented. There is a lack of harmonization of data formats, processing, analysis, and data transfer, which leads to incompatibilities and lost opportunities. Legal frameworks for data sharing are evolving. Clinicians, researchers, and citizens need improved methods, tools, and training to generate, analyze, and query data effectively. Addressing these barriers will contribute to creating the European Single Market for health, which will improve health arid healthcare for all Europearis. Funding Agencies|European Union [115568, 603160, 282510, 664691, 115749, 305033, 305397, 288028, 242189, 211601]; European Molecular Biology Laboratory; Wellcome Trust [WT098051]; [115372]; [257082]; [291814]; [291728]; [321567]; [262055]; [115446]; [602552]; [644753]; [634143]; [261357]; [305280]; [115525]; [2011 23 02]; [270089]; [278433]; [602525]; [201418]; [242135]; [260558]; [223411]; [305626]; [115621]; [611388]; [306000]; [354457]; [305564]; [115010]; [269978]
Genome Medicine arrow_drop_down Genome MedicineOther literature type . Article . 2016 . Peer-reviewedEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC4919856Data sources: PubMed CentralEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC5100330Data sources: PubMed CentralPublikationsserver der RWTH Aachen UniversityArticle . 2016Data sources: Publikationsserver der RWTH Aachen UniversitySpiral - Imperial College Digital RepositoryArticle . 2016Data sources: Spiral - Imperial College Digital RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTARecolector de Ciencia Abierta, RECOLECTA; Digital Repository of University of ZaragozaArticle . 2016License: CC BYThe University of Manchester - Institutional RepositoryArticle . 2016Data sources: The University of Manchester - Institutional RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTAOpen Repository and Bibliography - LuxembourgArticle . 2016Data sources: Open Repository and Bibliography - LuxembourgLUMC Scholarly Publications; NARCISOther literature type . Article . 2016add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 206 citations 206 popularity Top 1% influence Top 1% impulse Top 1% Powered by BIP!visibility 31visibility views 31 download downloads 150 Powered bymore_vert Genome Medicine arrow_drop_down Genome MedicineOther literature type . Article . 2016 . Peer-reviewedEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC4919856Data sources: PubMed CentralEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC5100330Data sources: PubMed CentralPublikationsserver der RWTH Aachen UniversityArticle . 2016Data sources: Publikationsserver der RWTH Aachen UniversitySpiral - Imperial College Digital RepositoryArticle . 2016Data sources: Spiral - Imperial College Digital RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTARecolector de Ciencia Abierta, RECOLECTA; Digital Repository of University of ZaragozaArticle . 2016License: CC BYThe University of Manchester - Institutional RepositoryArticle . 2016Data sources: The University of Manchester - Institutional RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTAOpen Repository and Bibliography - LuxembourgArticle . 2016Data sources: Open Repository and Bibliography - LuxembourgLUMC Scholarly Publications; NARCISOther literature type . Article . 2016add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1186/s13073-016-0323-y&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Part of book or chapter of book 2016Publisher:Springer International Publishing Funded by:EC | OpenBudgets.euEC| OpenBudgets.euAuthors: Jakub Klímek; Petr Škoda; Martin Nečaský;Jakub Klímek; Petr Škoda; Martin Nečaský;As Linked Data gains traction, the proper support for its publication and consumption is more important than ever. Even though there is a multitude of tools for preparation of Linked Data, they are still either quite limited, difficult to use or not compliant with recent W3C Recommendations. In this demonstration paper, we present LinkedPipes ETL, a lightweight, Linked Data preparation tool. It is focused mainly on smooth user experience including mobile devices, ease of integration based on full API coverage and universal usage thanks to its library of components. We build on our experience gained by development and use of UnifiedViews, our previous Linked Data ETL tool, and present four use cases in which our new tool excels in comparison.
https://zenodo.org/r... arrow_drop_down https://zenodo.org/record/1979...Part of book or chapter of bookLicense: CC BYData sources: UnpayWalladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1007/978-3-319-47602-5_20&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu18 citations 18 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!more_vert https://zenodo.org/r... arrow_drop_down https://zenodo.org/record/1979...Part of book or chapter of bookLicense: CC BYData sources: UnpayWalladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1007/978-3-319-47602-5_20&type=result"></script>'); --> </script>
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integration_instructions Research softwarekeyboard_double_arrow_right Software 2021 JavaScriptPublisher:bio.tools Funded by:EC | OpenBudgets.euEC| OpenBudgets.euAuthors: Klímek, Jakub; Škoda, Petr;Klímek, Jakub; Škoda, Petr;Extract Transform Load for Linked Data
All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::556c1fcae1615ebedfb5fcde449d885f&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::556c1fcae1615ebedfb5fcde449d885f&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2018Publisher:bio.tools Funded by:EC | EMBRIC, EC | INMARE, EC | ELIXIR-EXCELERATEEC| EMBRIC ,EC| INMARE ,EC| ELIXIR-EXCELERATEAuthors: Horner, David;Horner, David;A web service incorporating state of the art tools and workflows for the analysis of eDNA sequence data. Dedicated tools available in A-GAME allow efficient analysis of pooled libraries and rapid identification of candidate genes, reducing sequencing costs and saving the need for laborious manual annotation.
All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::b237d7af320f71de7115513d08103f2b&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=__bioTools__::b237d7af320f71de7115513d08103f2b&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2018 Italy EnglishPublisher:BioMed Central Funded by:EC | EMBRIC, EC | INMARE, EC | ELIXIR-EXCELERATEEC| EMBRIC ,EC| INMARE ,EC| ELIXIR-EXCELERATEM. Chiara; A. Placido; E. Picardi; L. R. Ceci; D. S. Horner; G. Pesole;Background Expression screening of environmental DNA (eDNA) libraries is a popular approach for the identification and characterization of novel microbial enzymes with promising biotechnological properties. In such “functional metagenomics” experiments, inserts, selected on the basis of activity assays, are sequenced with high throughput sequencing technologies. Assembly is followed by gene prediction, annotation and identification of candidate genes that are subsequently evaluated for biotechnological applications. Results Here we present A-GAME (A GAlaxy suite for functional MEtagenomics), a web service incorporating state of the art tools and workflows for the analysis of eDNA sequence data. We illustrate the potential of A-GAME workflows using real functional metagenomics data, showing that they outperform alternative metagenomics assemblers. Dedicated tools available in A-GAME allow efficient analysis of pooled libraries and rapid identification of candidate genes, reducing sequencing costs and saving the need for laborious manual annotation. Conclusion In conclusion, we believe A-GAME will constitute a valuable resource for the functional metagenomics community. A-GAME is publicly available at http://beaconlab.it/agame Electronic supplementary material The online version of this article (10.1186/s12864-017-4369-z) contains supplementary material, which is available to authorized users.
BMC Genomics; Archiv... arrow_drop_down Europe PubMed CentralArticle . 2018Full-Text: http://europepmc.org/articles/PMC5767027Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=2434/549892&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 5 citations 5 popularity Average influence Average impulse Average Powered by BIP!more_vert BMC Genomics; Archiv... arrow_drop_down Europe PubMed CentralArticle . 2018Full-Text: http://europepmc.org/articles/PMC5767027Data sources: PubMed Centraladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=2434/549892&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2016 Spain, Netherlands, Germany, Germany, United Kingdom, Luxembourg, Spain, Sweden, United Kingdom, United Kingdom, United Kingdom EnglishPublisher:Springer Science and Business Media LLC Funded by:EC | BLUEPRINT, EC | SYSMEDIBD, EC | P-MEDICINE +34 projectsEC| BLUEPRINT ,EC| SYSMEDIBD ,EC| P-MEDICINE ,EC| ERA-IB-2 ,EC| PSIMEX ,EC| DECIPHER ,EC| ESGI ,EC| EPIGENESYS ,EC| MEDALL ,EC| ERASYSAPP ,EC| PREDEMICS ,EC| CASYM ,EC| EMIF ,EC| ELIXIR ,EC| MIMOMICS ,EC| TRANSLOCATION ,EC| VPH-SHARE ,EC| BRIDGES ,EC| ASTERIX ,EC| SEMCARE ,EC| IDEAL ,EC| MedBioinformatics ,EC| STATEGRA ,WT| Wellcome Trust Sanger Institute - generic account for deposition of all core- funded research papers ,EC| U-BIOPRED ,EC| ECHO ,WT ,EC| CANCER-ID ,EC| PROTEOMEXCHANGE ,EC| COMBIMS ,EC| ERASYNBIO ,EC| KConnect ,EC| READNA ,EC| PREPARE ,EC| MULTIMOD ,EC| RADIANT ,EC| CHAARMCharles Auffray; Rudi Balling; Inês Barroso; László Bencze; Mikael Benson; Jay M. Bergeron; Enrique Bernal-Delgado; Niklas Blomberg; Christoph Bock; Ana Conesa; Susanna Del Signore; Christophe Delogne; Peter Devilee; Alberto Di Meglio; Marinus J.C. Eijkemans; Paul Flicek; Norbert Graf; Vera Grimm; Henk-Jan Guchelaar; Yike Guo; Ivo Gut; Allan Hanbury; Shahid Hanif; Ralf-Dieter Hilgers; Angel Honrado; D. Rod Hose; Jeanine J. Houwing-Duistermaat; Tim Hubbard; Sophie Helen Janacek; Haralampos Karanikas; Tim Kievits; Manfred Kohler; Andreas Kremer; Jerry Lanfear; Thomas Lengauer; Edith Maes; Theo F. Meert; Werner Müller; Dörthe Nickel; Peter Oledzki; Bertrand Pedersen; Milan Petkovic; Konstantinos Pliakos; Magnus Rattray; Josep Redón Más; Reinhard Schneider; Thierry Sengstag; Xavier Serra-Picamal; Wouter Spek; Lea A. I. Vaas; Okker van Batenburg; Marc Vandelaer; Péter Várnai; Pablo Villoslada; Juan Antonio Vizcaíno; John Peter Mary Wubbe; Gianluigi Zanetti;doi: 10.1186/s13073-016-0323-y , 10.1186/s13073-016-0376-y , 10.18154/rwth-conv-213156 , 10.17863/cam.42076 , 10.18154/rwth-conv-213157
handle: 11858/00-001M-0000-002C-1D02-C , 11858/00-001M-0000-002C-1D04-8 , 1887/99384 , 11858/00-001M-0000-002A-F90A-4 , 11858/00-001M-0000-002A-F908-8 , 1874/337769
pmc: PMC5100330 , PMC4919856
doi: 10.1186/s13073-016-0323-y , 10.1186/s13073-016-0376-y , 10.18154/rwth-conv-213156 , 10.17863/cam.42076 , 10.18154/rwth-conv-213157
handle: 11858/00-001M-0000-002C-1D02-C , 11858/00-001M-0000-002C-1D04-8 , 1887/99384 , 11858/00-001M-0000-002A-F90A-4 , 11858/00-001M-0000-002A-F908-8 , 1874/337769
pmc: PMC5100330 , PMC4919856
Medicine and healthcare are undergoing profound changes. Whole-genome sequencing and high-resolution imaging technologies are key drivers of this rapid and crucial transformation. Technological innovation combined with automation and miniaturization has triggered an explosion in data production that will soon reach exabyte proportions. How are we going to deal with this exponential increase in data production? The potential of "big data" for improving health is enormous but, at the same time, we face a wide range of challenges to overcome urgently. Europe is very proud of its cultural diversity; however, exploitation of the data made available through advances in genomic medicine, imaging, and a wide range of mobile health applications or connected devices is hampered by numerous historical, technical, legal, and political barriers. European health systems and databases are diverse and fragmented. There is a lack of harmonization of data formats, processing, analysis, and data transfer, which leads to incompatibilities and lost opportunities. Legal frameworks for data sharing are evolving. Clinicians, researchers, and citizens need improved methods, tools, and training to generate, analyze, and query data effectively. Addressing these barriers will contribute to creating the European Single Market for health, which will improve health arid healthcare for all Europearis. Funding Agencies|European Union [115568, 603160, 282510, 664691, 115749, 305033, 305397, 288028, 242189, 211601]; European Molecular Biology Laboratory; Wellcome Trust [WT098051]; [115372]; [257082]; [291814]; [291728]; [321567]; [262055]; [115446]; [602552]; [644753]; [634143]; [261357]; [305280]; [115525]; [2011 23 02]; [270089]; [278433]; [602525]; [201418]; [242135]; [260558]; [223411]; [305626]; [115621]; [611388]; [306000]; [354457]; [305564]; [115010]; [269978]
Genome Medicine arrow_drop_down Genome MedicineOther literature type . Article . 2016 . Peer-reviewedEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC4919856Data sources: PubMed CentralEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC5100330Data sources: PubMed CentralPublikationsserver der RWTH Aachen UniversityArticle . 2016Data sources: Publikationsserver der RWTH Aachen UniversitySpiral - Imperial College Digital RepositoryArticle . 2016Data sources: Spiral - Imperial College Digital RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTARecolector de Ciencia Abierta, RECOLECTA; Digital Repository of University of ZaragozaArticle . 2016License: CC BYThe University of Manchester - Institutional RepositoryArticle . 2016Data sources: The University of Manchester - Institutional RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTAOpen Repository and Bibliography - LuxembourgArticle . 2016Data sources: Open Repository and Bibliography - LuxembourgLUMC Scholarly Publications; NARCISOther literature type . Article . 2016add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1186/s13073-016-0323-y&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 206 citations 206 popularity Top 1% influence Top 1% impulse Top 1% Powered by BIP!visibility 31visibility views 31 download downloads 150 Powered bymore_vert Genome Medicine arrow_drop_down Genome MedicineOther literature type . Article . 2016 . Peer-reviewedEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC4919856Data sources: PubMed CentralEurope PubMed CentralArticle . 2016Full-Text: http://europepmc.org/articles/PMC5100330Data sources: PubMed CentralPublikationsserver der RWTH Aachen UniversityArticle . 2016Data sources: Publikationsserver der RWTH Aachen UniversitySpiral - Imperial College Digital RepositoryArticle . 2016Data sources: Spiral - Imperial College Digital RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTARecolector de Ciencia Abierta, RECOLECTA; Digital Repository of University of ZaragozaArticle . 2016License: CC BYThe University of Manchester - Institutional RepositoryArticle . 2016Data sources: The University of Manchester - Institutional RepositoryRecolector de Ciencia Abierta, RECOLECTAArticle . 2016Data sources: Recolector de Ciencia Abierta, RECOLECTAOpen Repository and Bibliography - LuxembourgArticle . 2016Data sources: Open Repository and Bibliography - LuxembourgLUMC Scholarly Publications; NARCISOther literature type . Article . 2016add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Part of book or chapter of book 2016Publisher:Springer International Publishing Funded by:EC | OpenBudgets.euEC| OpenBudgets.euAuthors: Jakub Klímek; Petr Škoda; Martin Nečaský;Jakub Klímek; Petr Škoda; Martin Nečaský;As Linked Data gains traction, the proper support for its publication and consumption is more important than ever. Even though there is a multitude of tools for preparation of Linked Data, they are still either quite limited, difficult to use or not compliant with recent W3C Recommendations. In this demonstration paper, we present LinkedPipes ETL, a lightweight, Linked Data preparation tool. It is focused mainly on smooth user experience including mobile devices, ease of integration based on full API coverage and universal usage thanks to its library of components. We build on our experience gained by development and use of UnifiedViews, our previous Linked Data ETL tool, and present four use cases in which our new tool excels in comparison.
https://zenodo.org/r... arrow_drop_down https://zenodo.org/record/1979...Part of book or chapter of bookLicense: CC BYData sources: UnpayWalladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eu18 citations 18 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!more_vert https://zenodo.org/r... arrow_drop_down https://zenodo.org/record/1979...Part of book or chapter of bookLicense: CC BYData sources: UnpayWalladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1007/978-3-319-47602-5_20&type=result"></script>'); --> </script>
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