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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Paudel, Dilli; Marcos, Diego; de Wit, Allard; Boogaard, Hendrik; +1 Authors

    Predictor inputs and label data for crop yield forecasting are not always available at the same spatial resolution. We propose a deep learning framework that uses high resolution inputs and low resolution labels to produce crop yield forecasts for both spatial levels. The forecasting model is calibrated by weak supervision from low resolution crop area and yield statistics. We evaluated the framework by disaggregating regional yields in Europe from parent statistical regions to sub-regions for five countries (Germany, Spain, France, Hungary, Italy) and two crops (soft wheat and potatoes). Performance of weakly supervised models was compared with linear trend models and Gradient-Boosted Decision Trees (GBDT). Higher resolution crop yield forecasts are useful to policymakers and other stakeholders. Weakly supervised deep learning methods provide a way to produce such forecasts even in the absence of high resolution yield data. Appeared at the AI for Earth Sciences workshop at @ICLR2022, April 29, 2022. https://ai4earthscience.github.io/iclr-2022-workshop/

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Research@WURarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    NARCIS; Research@WUR
    Conference object . 2022
    License: CC BY NC ND
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Research@WUR; Environmental Research Letters
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    Research@WUR; NARCIS
    Other literature type . Article . Conference object . 2022
    License: CC BY NC ND
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    Article . 2023
    Data sources: DOAJ
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Research@WURarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      NARCIS; Research@WUR
      Conference object . 2022
      License: CC BY NC ND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Research@WUR; Environmental Research Letters
      Other literature type . Article . 2023 . Peer-reviewed
      License: CC BY
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      Research@WUR; NARCIS
      Other literature type . Article . Conference object . 2022
      License: CC BY NC ND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Article . 2023
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Dejean, Sylvain; Tarascou, Sophie;

    Le déploiement de la fibre optique est une condition nécessaire pour relever les défis posés par l’économie numérique du XXIe siècle. Si 80 % des français se voient promettre à l’horizon 2022 d’avoir accès à la fibre à domicile, nous savons encore peu de choses sur les disparités locales et régionales que cela pourrait occasionner. Dans cet article, nous essayons, en nous basant sur des jeux de données hétérogènes, de développer une méthode permettant d’estimer les besoins des populations en connexion très haut débit afin de les confronter à la présence ou non de la fibre optique sur leur territoire. Parmi nos principaux résultats, nous montrons qu’il existe de fortes disparités territoriales dans l’accès et dans les besoins, certaines communes notamment péri-urbaines, représentant presque 3 millions d’habitants, pourraient être, au regard de leurs besoins, particulièrement fragilisées par l’absence de fibre optique.

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    Canadian Journal of Regional Science; Érudit
    Other literature type . Article . 2022 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Maanan, Mohamed; Kacem, Hicham,; Bouroubi, Yacine; Khomalli, Youssef; +5 Authors

    Abstract Land degradation is a problem that increasingly affects large areas of territories and affects various ecosystem services provided by coastal wetlands. These marine ecosystems provide valuable benefits to the environment and to humans, including services such as coastal blue carbon sequestration (CBCS) the economic value of which is still poorly understood. This paper investigated land use/cover (LULC) changes in Moulay Bousselham lagoon (MBL) from 1971 to 2020 and their effects on CBCS variation. The transformation of LULC and their cumulative conversions in coastal wetlands were studied during the 1971-2010 and 2010-2020 periods based on LULC data. Then the InVEST model was used to quantify the carbon storage provided by coastal ecosystems in response to LULC changes. The results show that the overall area of strictly wetland habitats in the MBL has decreased by 8.83% since 1971. There were 94 types of LULC transformation over 1971-2020, with significant wetland losses marked by the conversion of wet lawn and juncus meadow to cropland. Using recent estimates of social cost of carbon (SCC) and CO2 European Emission Allowances (EUA), the monetary value of CBCS service was calculated over the entire lagoon during the study period to reach gains between 371,053 and 3,803,295US$/y and losses between -10,127 and -103,806US$/y. If current trends of habitat loss continue, the capacity of coastal habitats to sequester and store CO2 will be significantly reduced. The study shows that revenues from CBCS service can accelerate the implementation of wetland rehabilitation strategies that have a positive impact on climate regulation.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ https://doi.org/10.2...arrow_drop_down
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    https://doi.org/10.21203/rs.3....
    Preprint . 2021
    License: CC BY
    Data sources: Crossref
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Preprint
    License: CC BY
    Data sources: UnpayWall
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Jiří Borovička; Felix Bettonvil; Gerd Baumgarten; Jörg Strunk; +3 Authors

    The C1-ungrouped carbonaceous chondrite Flensburg fell in Germany on September 12, 2019, in the daytime. We determined the atmospheric trajectory, velocity, and heliocentric orbit using one dedicated AllSky6 meteor camera and three casual video records of the bolide. It was found that the meteorite originated in the vicinity of the 5:2 resonance with Jupiter at heliocentric distance of 2.82 AU. When combined with the bolide energy reported by the U.S. Government sensors (USGS), the pre-atmospheric diameter of the meteoroid was estimated to 2 - 3 meters and the mass to 10,000 - 20,000 kg. The meteoroid fragmented heavily in the atmosphere at heights of 46 - 37 km, under dynamic pressures of 0.7 - 2 MPa. The recovery of just one meteorite suggests that only a very small part of the original mass reached the ground. The bolide velocity vector was compared with that reported by the USGS. There is good agreement in the radiant but the velocity value has been underestimated by the USGS by almost 1 km/s. Comment: Preprint accepted for publication in Meteoritics & Planetary Science after a minor revision

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCISarrow_drop_down
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    Meteoritics and Planetary Science; NARCIS
    Article . 2021 . Peer-reviewed
    License: Wiley Online Library User Agreement
    Data sources: Crossref; NARCIS
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    https://doi.org/10.48550/arxiv...
    Article . 2021
    License: arXiv Non-Exclusive Distribution
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCISarrow_drop_down
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      Meteoritics and Planetary Science; NARCIS
      Article . 2021 . Peer-reviewed
      License: Wiley Online Library User Agreement
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      https://doi.org/10.48550/arxiv...
      Article . 2021
      License: arXiv Non-Exclusive Distribution
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Long, Nathalie; Cornut, Pierre; Kolb, Virginia;

    Abstract. The ongoing phenomenon of climate change is leading to an upsurge in the number of extreme events. Territories must adapt to these modifications in order to protect their populations and the properties present in coastal areas. The adaptation of coastal areas also aims to make them more resilient to future events. In this article, we examine two strategies for adapting to coastal risks: holding the coastal line through hard constructions such as seawalls or ripraps and the managed retreat of activities and populations to a part of the territory not exposed to hazards. In France, these approaches are financed by a solidarity insurance system at the national level as well as local taxes. These solidarity systems aim to compensate the affected populations and finance implementation of the strategies chosen by local authorities. However, the French mainland coast generally attracts affluent residents, the price of land being higher than inland. This situation induces the presence of inequalities in these territories, inequalities which can be maintained or reinforced in the short and medium term when a defence strategy based on hard constructions is implemented. In such a trajectory, it appears that these territories would be less resilient in the long term, because of the maintenance costs of the structures and the uncertainties relating to the hazards (submersion, rising sea levels, erosion). Conversely, with a managed retreat strategy, inequalities would instead be done away with, since property and populations would no longer be exposed to hazards, which would cost society less and would lead these territories towards greater resilience in the long term. Only one social group would be strongly impacted by this strategy in the short term when they are subjected to a managed retreat to another part of the territory.

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    https://doi.org/10.5194/nhess-...
    Preprint . 2020 . Peer-reviewed
    License: CC BY
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    Natural Hazards and Earth System Sciences
    Article . Preprint . 2021
    License: CC BY
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    Natural Hazards and Earth System Sciences
    Article . 2021 . Peer-reviewed
    License: CC BY
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    Article . 2021
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    Article . 2021
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      https://doi.org/10.5194/nhess-...
      Preprint . 2020 . Peer-reviewed
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      Natural Hazards and Earth System Sciences
      Article . Preprint . 2021
      License: CC BY
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      Natural Hazards and Earth System Sciences
      Article . 2021 . Peer-reviewed
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      Article . 2021
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      Article . 2021
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Marie Louis; Marco Galimberti; Eric Archer; Simon Berrow; +11 Authors

    AbstractWhat are the mechanisms that allow species to extend their ranges and adapt to the novel environmental conditions they find in the newly available habitat? The study of parallel adaptation of pairs of populations to similar environments can provide great insights into this question. Here, we test for parallel evolution driven by niche specialization in a highly social marine mammal, the common bottlenose dolphin,Tursiops truncatus, and investigate the origins of the genetic variation driving local adaptation. Coastal ecotypes of common bottlenose dolphins have recurrently emerged in multiple regions of the world from pelagic ecotype populations, when novel habitat became available. Analyzing the whole genomes of 57 individuals using comparative population genomics approaches, we found that coastal ecotype evolution was relatively independent between the Atlantic and Pacific, but related between different regions within the Atlantic. We show that parallel adaptation to coastal habitat was facilitated by repeated selection on ancient alleles present as standing genetic variation in the pelagic populations. Genes under parallel adaptation to coastal habitats have roles in cognitive abilities and feeding. Therefore, parallel adaptation in long-lived social species may be driven by a combination of ecological opportunities, selection acting on ancient variants, and stable behavioural transmission of ecological specialisations. Tried and tested genetic variation that has been subject to repeated bouts of selection, may promote linked adaptive variants with minimal pleiotropic effects, thereby facilitating their persistence at low frequency in source populations and enabling parallel evolution.

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    Article . 2020
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    Authors: Snorre Sulheim; Tjaša Kumelj; Dino van Dissel; Ali Salehzadeh-Yazdi; +6 Authors

    Abstract Streptomyces coelicolor M1152 is a widely used host strain for the heterologous production of novel small molecule natural products, genetically engineered for this purpose through e.g. deletion of four of its native biosynthetic gene clusters (BGCs) for improved precursor supply. Regardless of its potential, a systems understanding of its tight regulatory network and the effects of the significant genomic changes in M1152 is missing. In this study, we compare M1152 to its ancestor M145, thereby connecting observed phenotypic differences to changes on transcription and translation. Measured protein levels are connected to predicted metabolic fluxes, facilitated by an enzyme-constrained genome-scale model (GEM), that by itself is a consensus result of a community effort. This approach connects observed differences in growth rate and glucose consumption to changes in central carbon metabolism, accompanied by differential expression of important regulons. Results suggest that precursors supply is not limiting secondary metabolism, informing that alternative strategies will be beneficial for further development of S. coelicolor for heterologous production of novel compounds. Importance This study provides the first systems description of S. coelicolor M1152, an engineered heterologous expression host widely used for the production and discovery of natural products. By combining time-series proteomics and transcriptomics, batch fermentation data and genome-scale modelling we can connect observed phenotypes to known genetic modifications and find extensive metabolic rearrangements in the M1152 strain compared to the wild-type stain M145. We furthermore found that the rational strategy of enhancing precursor supply will surprisingly only have limited impact. Instrumental to this study has been the genome-scale model that has allowed us to contextualize the transcriptional changes. To consolidate recent efforts in this field we reconstructed the consensus model Sco-GEM in an open-science framework. This approach facilitates further development by the research community in an organized manner, including version control, continuous integration and quality control and tracking of individual contributions.

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    Article . 2020 . Peer-reviewed
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    Authors: Straathof, Milou; Sinke, Michel R. T.; Roelofs, Theresia J. M.; Blezer, Erwin L. A.; +5 Authors

    AbstractAn improved understanding of the structure-function relationship in the brain is necessary to know to what degree structural connectivity underpins abnormal functional connectivity seen in disorders. We integrated high-field resting-state fMRI-based functional connectivity with high-resolution macro-scale diffusion-based and meso-scale neuronal tracer-based structural connectivity, to obtain an accurate depiction of the structure-function relationship in the rat brain. Our main goal was to identify to what extent structural and functional connectivity strengths are correlated, macro- and meso-scopically, across the cortex. Correlation analyses revealed a positive correspondence between functional and macro-scale diffusion-based structural connectivity, but no significant correlation between functional connectivity and meso-scale neuronal tracer-based structural connectivity. Zooming in on individual connections, we found strong functional connectivity in two well-known resting-state networks: the sensorimotor and default mode network. Strong functional connectivity within these networks coincided with strong short-range intrahemispheric structural connectivity, but with weak heterotopic interhemispheric and long-range intrahemispheric structural connectivity. Our study indicates the importance of combining measures of connectivity at distinct hierarchical levels to accurately determine connectivity across networks in the healthy and diseased brain. Although characteristics of the applied techniques may affect where structural and functional networks (dis)agree, distinct structure-function relationships across the brain could also have a biological basis.

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    Authors: Carsault, Tristan; Nika, J��r��me; Esling, Philippe;

    Recent researches on Automatic Chord Extraction (ACE) have focused on the improvement of models based on machine learning. However, most models still fail to take into account the prior knowledge underlying the labeling alphabets (chord labels). Furthermore, recent works have shown that ACE performances are converging towards a glass ceiling. Therefore, this prompts the need to focus on other aspects of the task, such as the introduction of musical knowledge in the representation, the improvement of the models towards more complex chord alphabets and the development of more adapted evaluation methods. In this paper, we propose to exploit specific properties and relationships between chord labels in order to improve the learning of statistical ACE models. Hence, we analyze the interdependence of the representations of chords and their associated distances, the precision of the chord alphabets, and the impact of the reduction of the alphabet before or after training of the model. Furthermore, we propose new training losses based on musical theory. We show that these improve the results of ACE systems based on Convolutional Neural Networks. By performing an in-depth analysis of our results, we uncover a set of related insights on ACE tasks based on statistical models, and also formalize the musical meaning of some classification errors. Accepted for publication in ISMIR, 2018

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    https://doi.org/10.48550/arxiv...
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      https://doi.org/10.48550/arxiv...
      Article . 2019
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    Authors: Raetz, S.; Schmidt, T.O.B.; Czesla, S.; Klocová, T.; +31 Authors

    SR is currently a Research Fellow at ESA/ESTEC. SR, CA, RE, MK and RN would like to thank DFG for support in the Priority Programme SPP 1385 on the 'First Ten Million Years of the Solar system' in projects NE 515/34-1 and -2, NE 515/33-1 and -2, and NE 515/35-1 and -2. TK acknowledges support by the DFG program CZ 222/1-1 and RTG 1351 (extrasolar planets and their host stars). MK would like to thank Ronald Redmer and DFG in project RE 882/12-2 for financial support. MF acknowledges financial support from grants AYA2014-54348-C3-1-R and AYA2011-30147-C03-01 of the Spanish Ministry of Economy and Competivity (MINECO), co-funded with EU FEDER funds. DK and VR acknowledge support by project RD 08-81 of Shumen University. Z-YW was supported by the Chinese National Natural Science Foundation grant no. 11373033. This work was also supported by the joint fund of Astronomy of the National Nature Science Foundation of China and the Chinese Academy of Science, under Grant U1231113. XZ was supported by the Chinese National Natural Science Foundation grands no. 11073032, and by the National Basic Research Program of China (973 Program), No. 2014CB845704 and 2013CB834902. MM and CG acknowledge DFG for support in program MU2695/13-1. JS, RN and MMH would like to thank the DFG for support from the SFB-TR 7. CG, and TOBS would like to thank DFG for support in project NE 515/30-1. CM acknowledges support from the DFG through grant SCHR665/7-1. RN would like to thank the German National Science Foundation (Deutsche Forschungsgemeinschaft, DFG) for general support in various projects. We would like to acknowledge financial support from the Thuringian government (B 515-07010) for the STK CCD camera used in this project. This work has been supported by a VEGA Grant 2/0143/13 of the Slovak Academy of Sciences. The observations obtained with the MPG 2.2 m telescope were supported by the Ministry of Education, Youth and Sports project - LG14013 (Tycho Brahe: Supporting Ground-based Astronomical Observations). We would like to thank the observers S. Ehlerova and A. Kawka for obtaining the data. CVSO 30 is a unique young low-mass system, because, for the first time, a close-in transiting and a wide directly imaged planet candidates are found around a common host star. The inner companion, CVSO 30 b, is the first possible young transiting planet orbiting a previously known weak-lined T Tauri star. With five telescopes of the 'Young Exoplanet Transit Initiative' located in Asia, Europe and South America, we monitored CVSO 30 over three years in a total of 144 nights and detected 33 fading events. In two more seasons we carried out follow-up observations with three telescopes. We can confirm that there is a change in the shape of the fading event between different observations and that the fading event even disappears and reappears. A total of 38 fading event light curves were simultaneously modelled. We derived the planetary, stellar and geometrical properties of the system and found them slightly smaller but in agreement with the values from the discovery paper. The period of the fading event was found to be 1.36 s shorter and 100 times more precise than the previous published value. If CVSO 30 b would be a giant planet on a precessing orbit, which we cannot confirm, yet, the precession period may be shorter than previously thought. But if confirmed as a planet it would be the youngest transiting planet ever detected and will provide important constraints on planet formation and migration time-scales. Raetz, St. et. al. Peer reviewed

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    https://doi.org/10.48550/arxiv...
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Paudel, Dilli; Marcos, Diego; de Wit, Allard; Boogaard, Hendrik; +1 Authors

    Predictor inputs and label data for crop yield forecasting are not always available at the same spatial resolution. We propose a deep learning framework that uses high resolution inputs and low resolution labels to produce crop yield forecasts for both spatial levels. The forecasting model is calibrated by weak supervision from low resolution crop area and yield statistics. We evaluated the framework by disaggregating regional yields in Europe from parent statistical regions to sub-regions for five countries (Germany, Spain, France, Hungary, Italy) and two crops (soft wheat and potatoes). Performance of weakly supervised models was compared with linear trend models and Gradient-Boosted Decision Trees (GBDT). Higher resolution crop yield forecasts are useful to policymakers and other stakeholders. Weakly supervised deep learning methods provide a way to produce such forecasts even in the absence of high resolution yield data. Appeared at the AI for Earth Sciences workshop at @ICLR2022, April 29, 2022. https://ai4earthscience.github.io/iclr-2022-workshop/

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    NARCIS; Research@WUR
    Conference object . 2022
    License: CC BY NC ND
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    Research@WUR; Environmental Research Letters
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    Other literature type . Article . Conference object . 2022
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    Article . 2023
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      Research@WUR; Environmental Research Letters
      Other literature type . Article . 2023 . Peer-reviewed
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      Other literature type . Article . Conference object . 2022
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    Authors: Dejean, Sylvain; Tarascou, Sophie;

    Le déploiement de la fibre optique est une condition nécessaire pour relever les défis posés par l’économie numérique du XXIe siècle. Si 80 % des français se voient promettre à l’horizon 2022 d’avoir accès à la fibre à domicile, nous savons encore peu de choses sur les disparités locales et régionales que cela pourrait occasionner. Dans cet article, nous essayons, en nous basant sur des jeux de données hétérogènes, de développer une méthode permettant d’estimer les besoins des populations en connexion très haut débit afin de les confronter à la présence ou non de la fibre optique sur leur territoire. Parmi nos principaux résultats, nous montrons qu’il existe de fortes disparités territoriales dans l’accès et dans les besoins, certaines communes notamment péri-urbaines, représentant presque 3 millions d’habitants, pourraient être, au regard de leurs besoins, particulièrement fragilisées par l’absence de fibre optique.

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    Canadian Journal of Regional Science; Érudit
    Other literature type . Article . 2022 . Peer-reviewed
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    Authors: Maanan, Mohamed; Kacem, Hicham,; Bouroubi, Yacine; Khomalli, Youssef; +5 Authors

    Abstract Land degradation is a problem that increasingly affects large areas of territories and affects various ecosystem services provided by coastal wetlands. These marine ecosystems provide valuable benefits to the environment and to humans, including services such as coastal blue carbon sequestration (CBCS) the economic value of which is still poorly understood. This paper investigated land use/cover (LULC) changes in Moulay Bousselham lagoon (MBL) from 1971 to 2020 and their effects on CBCS variation. The transformation of LULC and their cumulative conversions in coastal wetlands were studied during the 1971-2010 and 2010-2020 periods based on LULC data. Then the InVEST model was used to quantify the carbon storage provided by coastal ecosystems in response to LULC changes. The results show that the overall area of strictly wetland habitats in the MBL has decreased by 8.83% since 1971. There were 94 types of LULC transformation over 1971-2020, with significant wetland losses marked by the conversion of wet lawn and juncus meadow to cropland. Using recent estimates of social cost of carbon (SCC) and CO2 European Emission Allowances (EUA), the monetary value of CBCS service was calculated over the entire lagoon during the study period to reach gains between 371,053 and 3,803,295US$/y and losses between -10,127 and -103,806US$/y. If current trends of habitat loss continue, the capacity of coastal habitats to sequester and store CO2 will be significantly reduced. The study shows that revenues from CBCS service can accelerate the implementation of wetland rehabilitation strategies that have a positive impact on climate regulation.

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    https://doi.org/10.21203/rs.3....
    Preprint . 2021
    License: CC BY
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    Authors: Jiří Borovička; Felix Bettonvil; Gerd Baumgarten; Jörg Strunk; +3 Authors

    The C1-ungrouped carbonaceous chondrite Flensburg fell in Germany on September 12, 2019, in the daytime. We determined the atmospheric trajectory, velocity, and heliocentric orbit using one dedicated AllSky6 meteor camera and three casual video records of the bolide. It was found that the meteorite originated in the vicinity of the 5:2 resonance with Jupiter at heliocentric distance of 2.82 AU. When combined with the bolide energy reported by the U.S. Government sensors (USGS), the pre-atmospheric diameter of the meteoroid was estimated to 2 - 3 meters and the mass to 10,000 - 20,000 kg. The meteoroid fragmented heavily in the atmosphere at heights of 46 - 37 km, under dynamic pressures of 0.7 - 2 MPa. The recovery of just one meteorite suggests that only a very small part of the original mass reached the ground. The bolide velocity vector was compared with that reported by the USGS. There is good agreement in the radiant but the velocity value has been underestimated by the USGS by almost 1 km/s. Comment: Preprint accepted for publication in Meteoritics & Planetary Science after a minor revision

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    Meteoritics and Planetary Science; NARCIS
    Article . 2021 . Peer-reviewed
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    https://doi.org/10.48550/arxiv...
    Article . 2021
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      Article . 2021 . Peer-reviewed
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      https://doi.org/10.48550/arxiv...
      Article . 2021
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    Authors: Long, Nathalie; Cornut, Pierre; Kolb, Virginia;

    Abstract. The ongoing phenomenon of climate change is leading to an upsurge in the number of extreme events. Territories must adapt to these modifications in order to protect their populations and the properties present in coastal areas. The adaptation of coastal areas also aims to make them more resilient to future events. In this article, we examine two strategies for adapting to coastal risks: holding the coastal line through hard constructions such as seawalls or ripraps and the managed retreat of activities and populations to a part of the territory not exposed to hazards. In France, these approaches are financed by a solidarity insurance system at the national level as well as local taxes. These solidarity systems aim to compensate the affected populations and finance implementation of the strategies chosen by local authorities. However, the French mainland coast generally attracts affluent residents, the price of land being higher than inland. This situation induces the presence of inequalities in these territories, inequalities which can be maintained or reinforced in the short and medium term when a defence strategy based on hard constructions is implemented. In such a trajectory, it appears that these territories would be less resilient in the long term, because of the maintenance costs of the structures and the uncertainties relating to the hazards (submersion, rising sea levels, erosion). Conversely, with a managed retreat strategy, inequalities would instead be done away with, since property and populations would no longer be exposed to hazards, which would cost society less and would lead these territories towards greater resilience in the long term. Only one social group would be strongly impacted by this strategy in the short term when they are subjected to a managed retreat to another part of the territory.

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    https://doi.org/10.5194/nhess-...
    Preprint . 2020 . Peer-reviewed
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    Natural Hazards and Earth System Sciences
    Article . Preprint . 2021
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    Natural Hazards and Earth System Sciences
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      https://doi.org/10.5194/nhess-...
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      Natural Hazards and Earth System Sciences
      Article . Preprint . 2021
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      Natural Hazards and Earth System Sciences
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    Authors: Marie Louis; Marco Galimberti; Eric Archer; Simon Berrow; +11 Authors

    AbstractWhat are the mechanisms that allow species to extend their ranges and adapt to the novel environmental conditions they find in the newly available habitat? The study of parallel adaptation of pairs of populations to similar environments can provide great insights into this question. Here, we test for parallel evolution driven by niche specialization in a highly social marine mammal, the common bottlenose dolphin,Tursiops truncatus, and investigate the origins of the genetic variation driving local adaptation. Coastal ecotypes of common bottlenose dolphins have recurrently emerged in multiple regions of the world from pelagic ecotype populations, when novel habitat became available. Analyzing the whole genomes of 57 individuals using comparative population genomics approaches, we found that coastal ecotype evolution was relatively independent between the Atlantic and Pacific, but related between different regions within the Atlantic. We show that parallel adaptation to coastal habitat was facilitated by repeated selection on ancient alleles present as standing genetic variation in the pelagic populations. Genes under parallel adaptation to coastal habitats have roles in cognitive abilities and feeding. Therefore, parallel adaptation in long-lived social species may be driven by a combination of ecological opportunities, selection acting on ancient variants, and stable behavioural transmission of ecological specialisations. Tried and tested genetic variation that has been subject to repeated bouts of selection, may promote linked adaptive variants with minimal pleiotropic effects, thereby facilitating their persistence at low frequency in source populations and enabling parallel evolution.

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    https://www.biorxiv.org/conten...
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    Article . 2020
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    Authors: Snorre Sulheim; Tjaša Kumelj; Dino van Dissel; Ali Salehzadeh-Yazdi; +6 Authors

    Abstract Streptomyces coelicolor M1152 is a widely used host strain for the heterologous production of novel small molecule natural products, genetically engineered for this purpose through e.g. deletion of four of its native biosynthetic gene clusters (BGCs) for improved precursor supply. Regardless of its potential, a systems understanding of its tight regulatory network and the effects of the significant genomic changes in M1152 is missing. In this study, we compare M1152 to its ancestor M145, thereby connecting observed phenotypic differences to changes on transcription and translation. Measured protein levels are connected to predicted metabolic fluxes, facilitated by an enzyme-constrained genome-scale model (GEM), that by itself is a consensus result of a community effort. This approach connects observed differences in growth rate and glucose consumption to changes in central carbon metabolism, accompanied by differential expression of important regulons. Results suggest that precursors supply is not limiting secondary metabolism, informing that alternative strategies will be beneficial for further development of S. coelicolor for heterologous production of novel compounds. Importance This study provides the first systems description of S. coelicolor M1152, an engineered heterologous expression host widely used for the production and discovery of natural products. By combining time-series proteomics and transcriptomics, batch fermentation data and genome-scale modelling we can connect observed phenotypes to known genetic modifications and find extensive metabolic rearrangements in the M1152 strain compared to the wild-type stain M145. We furthermore found that the rational strategy of enhancing precursor supply will surprisingly only have limited impact. Instrumental to this study has been the genome-scale model that has allowed us to contextualize the transcriptional changes. To consolidate recent efforts in this field we reconstructed the consensus model Sco-GEM in an open-science framework. This approach facilitates further development by the research community in an organized manner, including version control, continuous integration and quality control and tracking of individual contributions.

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    iScience; NARCIS
    Article . 2020 . Peer-reviewed
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    Article . 2020
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    Authors: Straathof, Milou; Sinke, Michel R. T.; Roelofs, Theresia J. M.; Blezer, Erwin L. A.; +5 Authors

    AbstractAn improved understanding of the structure-function relationship in the brain is necessary to know to what degree structural connectivity underpins abnormal functional connectivity seen in disorders. We integrated high-field resting-state fMRI-based functional connectivity with high-resolution macro-scale diffusion-based and meso-scale neuronal tracer-based structural connectivity, to obtain an accurate depiction of the structure-function relationship in the rat brain. Our main goal was to identify to what extent structural and functional connectivity strengths are correlated, macro- and meso-scopically, across the cortex. Correlation analyses revealed a positive correspondence between functional and macro-scale diffusion-based structural connectivity, but no significant correlation between functional connectivity and meso-scale neuronal tracer-based structural connectivity. Zooming in on individual connections, we found strong functional connectivity in two well-known resting-state networks: the sensorimotor and default mode network. Strong functional connectivity within these networks coincided with strong short-range intrahemispheric structural connectivity, but with weak heterotopic interhemispheric and long-range intrahemispheric structural connectivity. Our study indicates the importance of combining measures of connectivity at distinct hierarchical levels to accurately determine connectivity across networks in the healthy and diseased brain. Although characteristics of the applied techniques may affect where structural and functional networks (dis)agree, distinct structure-function relationships across the brain could also have a biological basis.

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    Authors: Carsault, Tristan; Nika, J��r��me; Esling, Philippe;

    Recent researches on Automatic Chord Extraction (ACE) have focused on the improvement of models based on machine learning. However, most models still fail to take into account the prior knowledge underlying the labeling alphabets (chord labels). Furthermore, recent works have shown that ACE performances are converging towards a glass ceiling. Therefore, this prompts the need to focus on other aspects of the task, such as the introduction of musical knowledge in the representation, the improvement of the models towards more complex chord alphabets and the development of more adapted evaluation methods. In this paper, we propose to exploit specific properties and relationships between chord labels in order to improve the learning of statistical ACE models. Hence, we analyze the interdependence of the representations of chords and their associated distances, the precision of the chord alphabets, and the impact of the reduction of the alphabet before or after training of the model. Furthermore, we propose new training losses based on musical theory. We show that these improve the results of ACE systems based on Convolutional Neural Networks. By performing an in-depth analysis of our results, we uncover a set of related insights on ACE tasks based on statistical models, and also formalize the musical meaning of some classification errors. Accepted for publication in ISMIR, 2018

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    https://doi.org/10.48550/arxiv...
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      https://doi.org/10.48550/arxiv...
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    Authors: Raetz, S.; Schmidt, T.O.B.; Czesla, S.; Klocová, T.; +31 Authors

    SR is currently a Research Fellow at ESA/ESTEC. SR, CA, RE, MK and RN would like to thank DFG for support in the Priority Programme SPP 1385 on the 'First Ten Million Years of the Solar system' in projects NE 515/34-1 and -2, NE 515/33-1 and -2, and NE 515/35-1 and -2. TK acknowledges support by the DFG program CZ 222/1-1 and RTG 1351 (extrasolar planets and their host stars). MK would like to thank Ronald Redmer and DFG in project RE 882/12-2 for financial support. MF acknowledges financial support from grants AYA2014-54348-C3-1-R and AYA2011-30147-C03-01 of the Spanish Ministry of Economy and Competivity (MINECO), co-funded with EU FEDER funds. DK and VR acknowledge support by project RD 08-81 of Shumen University. Z-YW was supported by the Chinese National Natural Science Foundation grant no. 11373033. This work was also supported by the joint fund of Astronomy of the National Nature Science Foundation of China and the Chinese Academy of Science, under Grant U1231113. XZ was supported by the Chinese National Natural Science Foundation grands no. 11073032, and by the National Basic Research Program of China (973 Program), No. 2014CB845704 and 2013CB834902. MM and CG acknowledge DFG for support in program MU2695/13-1. JS, RN and MMH would like to thank the DFG for support from the SFB-TR 7. CG, and TOBS would like to thank DFG for support in project NE 515/30-1. CM acknowledges support from the DFG through grant SCHR665/7-1. RN would like to thank the German National Science Foundation (Deutsche Forschungsgemeinschaft, DFG) for general support in various projects. We would like to acknowledge financial support from the Thuringian government (B 515-07010) for the STK CCD camera used in this project. This work has been supported by a VEGA Grant 2/0143/13 of the Slovak Academy of Sciences. The observations obtained with the MPG 2.2 m telescope were supported by the Ministry of Education, Youth and Sports project - LG14013 (Tycho Brahe: Supporting Ground-based Astronomical Observations). We would like to thank the observers S. Ehlerova and A. Kawka for obtaining the data. CVSO 30 is a unique young low-mass system, because, for the first time, a close-in transiting and a wide directly imaged planet candidates are found around a common host star. The inner companion, CVSO 30 b, is the first possible young transiting planet orbiting a previously known weak-lined T Tauri star. With five telescopes of the 'Young Exoplanet Transit Initiative' located in Asia, Europe and South America, we monitored CVSO 30 over three years in a total of 144 nights and detected 33 fading events. In two more seasons we carried out follow-up observations with three telescopes. We can confirm that there is a change in the shape of the fading event between different observations and that the fading event even disappears and reappears. A total of 38 fading event light curves were simultaneously modelled. We derived the planetary, stellar and geometrical properties of the system and found them slightly smaller but in agreement with the values from the discovery paper. The period of the fading event was found to be 1.36 s shorter and 100 times more precise than the previous published value. If CVSO 30 b would be a giant planet on a precessing orbit, which we cannot confirm, yet, the precession period may be shorter than previously thought. But if confirmed as a planet it would be the youngest transiting planet ever detected and will provide important constraints on planet formation and migration time-scales. Raetz, St. et. al. Peer reviewed

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