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16 Research products

  • DARIAH EU
  • 2014-2023
  • Publications
  • EC|FP7
  • DARIAH EU

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Petzold, Andreas; Bundke, Ulrich; Hienola, Anca; Laj, Paolo; +10 Authors

    Abstract. Acquiring and distributing essential information for understanding global biogeochemical interactions between the atmosphere and ecosystems, and how climate-ecosystem feedback loops may change atmospheric composition in the future is a fundamental pre-requisite for societal resilience in view of climate change. Particularly, the detection of trends and periodicity in the presence of greenhouse gases and short-lived climate-active atmospheric constituents is an important aspect of climate science. Thus, the availability of an easy and fast access to reliable, long-term, and high-quality environmental data is recognized as fundamental for research and for developing environmental prediction and assessment services. In our Opinion Article, we develop the role environmental research infrastructures in Europe (ENVRI RIs) and particularly the atmosphere-centred research infrastructures ACTRIS, IAGOS and ICOS can assume with their capacities for standardised acquisition and reporting of long-term and high-quality observational data, complemented by rich metadata, for the provision of data by open access, and for data interoperability across different research fields including all fields of environmental sciences and beyond. Resulting from these capacities in data collection and provision, we elaborate on the novel research opportunities in atmospheric sciences which evolve from the combination of open-access and interoperable observational data, tools and technologies offered by data-intensive science, and the emerging service ecosystem of the collaboration platform ENVRI-Hub, hosted by the European Open Science Cloud.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ https://doi.org/10.5...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    https://doi.org/10.5194/egusph...
    Preprint . 2023 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Copernicus Publications
    Other literature type . 2023
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ https://doi.org/10.5...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      https://doi.org/10.5194/egusph...
      Preprint . 2023 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Copernicus Publications
      Other literature type . 2023
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Emiliano Degl'Innocenti; Alfredo Cosco; Fabrizio Butini; Roberta Giacomi; +1 Authors

    TRAME is a research infrastructure for medieval manuscripts. The TRAME engine scans a set of sources for searched terms and retrieves links to a wide range of possible information, from simple reference, to detailed manuscript record, to full text transcriptions. Currently, it is possible to perform queries by: free-text, shelfmark, author, title, date, copyst or incipit, on more than 80 selected scholarly digital resources across EU and USA. Since 2014 September 1st, TRAME has entered a new phase and the current work is focused on: extending the meta-search approach to other web resources, leveraging the users interaction to define an ontology for medieval manuscripts, re-designing the front-end towards a new UX approach.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao CNR ExploRAarrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    CNR ExploRA
    Conference object . 2016
    Data sources: CNR ExploRA
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    https://doi.org/10.1007/978-3-...
    Part of book or chapter of book . 2016 . Peer-reviewed
    License: Springer TDM
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao CNR ExploRAarrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      CNR ExploRA
      Conference object . 2016
      Data sources: CNR ExploRA
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      https://doi.org/10.1007/978-3-...
      Part of book or chapter of book . 2016 . Peer-reviewed
      License: Springer TDM
      Data sources: Crossref
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Callingham, J. R.; Shimwell, T. W.; Vedantham, H. K.; Bassa, C. G.; +43 Authors

    The LOFAR data in this manuscript were processed by the LOFAR Two-Metre Sky Survey (LoTSS) team. This team made use of the LOFAR direction-independent calibration pipeline (https://github.com/lofar-astron/prefactor), which was deployed by the LOFAR e-infragroup on the Dutch National Grid infrastructure with support of the SURF Co-operative through grants e-infra 160022 e-infra 160152 (Mechev et al. 2017). The LoTSS direction dependent calibration and imaging pipeline (http://github.com/mhardcastle/ddf-pipeline/) was run on compute clusters at Leiden Observatory and the University of Hertfordshire, which are supported by a European Research Council (ERC) Advanced Grant [NEWCLUSTERS-321271] and the UK Science and Technology Funding Council (STFC) [ST/P000096/1]. The Jülich LOFAR Long Term Archive and the German LOFAR network are both coordinated and operated by the Jülich Supercomputing Centre (JSC), and computing resources on the supercomputer JUWELS at JSC were provided by the Gauss Centre for Supercomputing e.V. (grant CHTB00) through the John von Neumann Institute for Computing (NIC). J.R.C. thanks the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) for support via the Talent Programme Veni grant. H.K. and S.B. acknowledge funding from the NWO for the project e-MAPS (project number Vi.Vidi.203.093) under the NWO talent scheme VIDI. T.W.H.Y. acknowledges funding from EOSC Future (Grant Agreement no. 101017536) projects funded by the European Union’s Horizon 2020 research and innovation programme. P.N.B. is grateful for support from the UK STFC via grant ST/V000594/1. M.J.H. acknowledges support from the UK STFC [ST/V000624/1]. M.H. acknowledges funding from the ERC under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 772663). R.J.v.W. and R.T. acknowledge support from the ERC Starting Grant ClusterWeb 804208. G.J.W. gratefully acknowledges the support of an Emeritus Fellowship from The Leverhulme Trust. D.J.B. acknowledges funding from the German Science Foundation DFG, via the Collaborative Research Center SFB1491 “Cosmic Interacting Matters – From Source to Signal”. A. Bonafede, A. Botteon, D.N.H., and C.J.R. acknowledge support from ERC Stg DRA-NOEL n. 714245 and MIUR FARE grant “SMS”. A.D. acknowledges support by the BMBF Verbundforschung under the grant 05A20STA. K.L.E. is a Jan-sky Fellow of the National Radio Astronomy Observatory. M. Haj and K.C.H. acknowledge the MSHE for granting funds for the Polish contribution to the International LOFAR Telescope (MSHE decision no. DIR/WK/2016/2017/05-1) and for maintenance of the LOFAR PL-612 Baldy (MSHE decision no. 59/E-383/SPUB/SP/2019.1), and LOFAR PL-611 Lazy (MSHE decision no. 46/E-338/SPUB/SP/2019). M.K. acknowledges support from the German Science Foundation DFG, via the Research Unit FOR 5195 “Relativistic Jets in Active Galaxies”. M.K.B. acknowledges support from the National Science Centre, Poland under grant no. 2017/26/E/ST9/00216. B.M. acknowledges support from the UK STFC under grants ST/R00109X/1, ST/R000794/1, and ST/T000295/1. L.K.M. is grateful for support from the UKRI Future Leaders Fellowship (grant MR/T042842/1). D.G.N. acknowledges funding from Conicyt through Fondecyt Postdoctorado (project code 3220195). M.P.T. acknowledges financial support from the Spanish Ministerio de Ciencia e Innovación (MCIN), the Agencia Estatal de Investigación (AEI) through the “Center of Excellence Severo Ochoa” award to the Instituto de Astrofísica de Andalucía (SEV-2017-0709) and through grant PID2020-117404GB-C21 funded by MCIN/AEI/10.13039/501100011033. T.P.R. acknowledges support from the ERC Grant No. 743029 (EASY). A.R. acknowledges funding from the NWO Aspasia grant (number: 015.016.033). M.V. acknowledges financial support from the Inter-University Institute for Data Intensive Astronomy (IDIA), a partnership of the University of Cape Town, the University of Pretoria, the University of the Western Cape and the South African Radio Astronomy Observatory, and from the South African Department of Science and Innovation’s National Research Foundation under the ISARP RADIOSKY2020 Joint Research Scheme (DSI-NRF Grant Number 113121) and the CSUR HIPPO Project (DSI-NRF Grant Number 121291). This research has made use of the SIMBAD database, operated at CDS, Strasbourg, France, and NASA’s Astrophysics Data System. This work has also made use of TOPCAT (Taylor 2005); the IPYTHON package (Pérez & Granger 2007); SciPy (Jones et al. 2001); MATPLOTLIB, a PYTHON library for publication quality graphics (Hunter 2007); ASTROPY, a community-developed core PYTHON package for astronomy (Astropy Collaboration 2013); and NUMPY (Van Der Walt et al. 2011). We present the detection of 68 sources from the most sensitive radio survey in circular polarisation conducted to date. We used the second data release of the 144 MHz LOFAR Two-metre Sky Survey to produce circularly polarised maps with a median noise of 140 µJy beam−1 and resolution of 20″ for ≈27% of the northern sky (5634 deg2). The leakage of total intensity into circular polarisation is measured to be ≈0.06%, and our survey is complete at flux densities ≥1 mJy. A detection is considered reliable when the circularly polarised fraction exceeds 1%. We find the population of circularly polarised sources is composed of four distinct classes: stellar systems, pulsars, active galactic nuclei, and sources unidentified in the literature. The stellar systems can be further separated into chromospherically active stars, M dwarfs, and brown dwarfs. Based on the circularly polarised fraction and lack of an optical counterpart, we show it is possible to infer whether the unidentified sources are likely unknown pulsars or brown dwarfs. By the completion of this survey of the northern sky, we expect to detect 300±100 circularly polarised sources. © The Authors 2023. Full list of authors: Callingham, J. R.; Shimwell, T. W.; Vedantham, H. K.; Bassa, C. G.; O'Sullivan, S. P.; Yiu, T. W. H.; Bloot, S.; Best, P. N.; Hardcastle, M. J.; Haverkorn, M.; Kavanagh, R. D.; Lamy, L.; Pope, B. J. S.; Rottgering, H. J. A.; Schwarz, D. J.; Tasse, C.; van Weeren, R. J.; White, G. J.; Zarka, P.; Bomans, D. J.; Bonafede, A.; Bonato, M.; Botteon, A.; Bruggen, M.; Chyzy, K. T.; Drabent, A.; Emig, K. L.; Gloudemans, A. J.; Guerkan, G.; Hajduk, M.; Hoang, D. N.; Hoeft, M.; Iacobelli, M.; Kadler, M.; Kunert-Bajraszewska, M.; Mingo, B.; Morabito, L. K.; Nair, D. G.; Perez-Torres, M.; Ray, T. P.; Riseley, C. J.; Rowlinson, A.; Shulevski, A.; Sweijen, F.; Timmerman, R.; Vaccari, M.; Zheng, J.-- This is an Open Access article, published by EDP Sciences, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. With funding from the Spanish government through the "Severo Ochoa Centre of Excellence" accreditation (CEX2021-001131-S). Peer reviewed

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Durham Research Onli...arrow_drop_down
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    Durham Research Online
    Article . 2023 . Peer-reviewed
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    NARCIS
    Article . 2023
    Data sources: NARCIS
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Astronomy and Astrophysics
    Article . 2023
    Data sources: NARCIS
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Radboud Repository
    Article . 2023
    Data sources: Radboud Repository
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    https://doi.org/10.48550/arxiv...
    Article . 2022
    License: CC BY
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Durham Research Onli...arrow_drop_down
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      Durham Research Online
      Article . 2023 . Peer-reviewed
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      NARCIS
      Article . 2023
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      Astronomy and Astrophysics
      Article . 2023
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      Radboud Repository
      Article . 2023
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      https://doi.org/10.48550/arxiv...
      Article . 2022
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Berg, Hannes; Wirtz Martin, Maria A.; Altincekic, Nadide; Alshamleh, Islam; +20 Authors

    SARS-CoV-2 (SCoV2) and its variants of concern pose serious challenges to the public health. The variants increased challenges to vaccines, thus necessitating for development of new intervention strategies including anti-virals. Within the international Covid19-NMR consortium, we have identified binders targeting the RNA genome of SCoV2. We established protocols for the production and NMR characterization of more than 80 % of all SCoV2 proteins. Here, we performed an NMR screening using a fragment library for binding to 25 SCoV2 proteins and identified hits also against previously unexplored SCoV2 proteins. Computational mapping was used to predict binding sites and identify functional moieties (chemotypes) of the ligands occupying these pockets. Striking consensus was observed between NMR-detected binding sites of the main protease and the computational procedure. Our investigation provides novel structural and chemical space for structure-based drug design against the SCoV2 proteome. Angewandte Chemie. International Edition, 61 (46) ISSN:0570-0833 ISSN:1433-7851 ISSN:1521-3773

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    Authors: Hannes Berg; Maria A. Wirtz Martin; Nadide Altincekic; Islam Alshamleh; +79 Authors

    Work at BMRZ is supported by the state of Hesse. Work in Covid19-NMR was supported by the Goethe Corona Funds, by the IWBEFRE-program 20007375 of state of Hesse, the DFG through CRC902: “Molecular Principles of RNA-based regulation.” and through infrastructure funds (project numbers: 277478796, 277479031, 392682309, 452632086, 70653611) and by European Union’s Horizon 2020 research and innovation program iNEXT-discovery under grant agreement No 871037. BY-COVID receives funding from the European Union’s Horizon Europe Research and Innovation Programme under grant agreement number 101046203. “INSPIRED” (MIS 5002550) project, implemented under the Action “Reinforcement of the Research and Innovation Infrastructure,” funded by the Operational Program “Competitiveness, Entrepreneurship and Innovation” (NSRF 2014–2020) and co-financed by Greece and the EU (European Regional Development Fund) and the FP7 REGPOT CT-2011-285950—“SEE-DRUG” project (purchase of UPAT’s 700 MHz NMR equipment). The support of the CERM/CIRMMP center of Instruct-ERIC is gratefully acknowledged. This work has been funded in part by a grant of the Italian Ministry of University and Research (FISR2020IP_02112, ID-COVID) and by Fondazione CR Firenze. A.S. is supported by the Deutsche Forschungsgemeinschaft [SFB902/B16, SCHL2062/2-1] and the Johanna Quandt Young Academy at Goethe [2019/AS01]. M.H. and C.F. thank SFB902 and the Stiftung Polytechnische Gesellschaft for the Scholarship. L.L. work was supported by the French National Research Agency (ANR, NMR-SCoV2-ORF8), the Fondation de la Recherche Médicale (FRM, NMR-SCoV2-ORF8), FINOVI and the IR-RMN-THC Fr3050 CNRS. Work at UConn Health was supported by grants from the US National Institutes of Health (R01 GM135592 to B.H., P41 GM111135 and R01 GM123249 to J.C.H.) and the US National Science Foundation (DBI 2030601 to J.C.H.). Latvian Council of Science Grant No. VPP-COVID-2020/1-0014. National Science Foundation EAGER MCB-2031269. This work was supported by the grant Krebsliga KFS-4903-08-2019 and SNF-311030_192646 to J.O. P.G. (ITMP) The EOSC Future project is co-funded by the European Union Horizon Programme call INFRAEOSC-03-2020—Grant Agreement Number 101017536. Open Access funding enabled and organized by Projekt DEAL SARS-CoV-2 (SCoV2) and its variants of concern pose serious challenges to the public health. The variants increased challenges to vaccines, thus necessitating for development of new intervention strategies including anti-virals. Within the international Covid19-NMR consortium, we have identified binders targeting the RNA genome of SCoV2. We established protocols for the production and NMR characterization of more than 80 % of all SCoV2 proteins. Here, we performed an NMR screening using a fragment library for binding to 25 SCoV2 proteins and identified hits also against previously unexplored SCoV2 proteins. Computational mapping was used to predict binding sites and identify functional moieties (chemotypes) of the ligands occupying these pockets. Striking consensus was observed between NMR-detected binding sites of the main protease and the computational procedure. Our investigation provides novel structural and chemical space for structure-based drug design against the SCoV2 proteome. 12 pags., 4 figs., 3 tabs. Peer reviewed

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    Authors: Boukhelifa , Nadia; Giannisakis , Emmanouil; Dimara , Evanthia; Willett , Wesley; +1 Authors

    International audience; In this paper we describe the development and evaluation of a visual analytics tool to support historical research. Historians continuously gather data related to their scholarly research from archival visits and background search. Organising and making sense of all this data can be challenging as many historians continue to rely on analog or basic digital tools. We built an integrated note-taking environment for historians which unifies a set of func-tionalities we identified as important for historical research including editing, tagging, searching, sharing and visualization. Our approach was to involve users from the initial stage of brainstorming and requirement analysis through to design, implementation and evaluation. We report on the process and results of our work, and conclude by reflecting on our own experience in conducting user-centered visual analytics design for digital humanities.

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    Authors: Edmond, Jennifer; Morselli, Francesca;

    PurposeThis paper proposes a new perspective on the enormous and unresolved challenge to existing practices of publication and documentation posed by the outputs of digital research projects in the humanities, where much good work is being lost due to resource or technical challenges.Design/methodology/approachThe paper documents and analyses both the existing literature on promoting sustainability for the outputs of digital humanities projects and the innovative approach of a single large-scale project.FindingsThe findings of the research presented show that sustainability planning for large-scale research projects needs to consider data and technology but also community, communications and process knowledge simultaneously. In addition, it should focus not only on a project as a collection of tangible and intangible assets, but also on the potential user base for these assets and what these users consider valuable about them.Research limitations/implicationsThe conclusions of the paper have been formulated in the context of one specific project. As such, it may amplify the specificities of this project in its results.Practical implicationsAn approach to project sustainability following the recommendations outlined in this paper would include a number of uncommon features, such as a longer development horizon, wider perspective on project results, and an audit of tacit and explicit knowledge.Social ImplicationsThese results can ultimately preserve public investment in projects.Originality/valueThis paper supplements more reductive models for project sustainability with a more holistic approach that others may learn from in mapping and sustaining user value for their projects for the medium to long terms.

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  • Authors: Beneš, Jakub; Bulatovic, Natasa; Edmond, Jennifer; Knežević,, Milica; +3 Authors

    Over the course of its four year project timeline, the CENDARI project has collected archival descriptions and metadata in various formats from a broad range of cultural heritage institutions. These data were drawn together in a single repository and are being stored there. The repository contains curated data which has been manually established by the CENDARI team as well as data acquired from small, ‘hidden’ archives in spreadsheet format or from big aggregators with advanced data exchange tools in place. While the acquisition and curation of heterogeneous data in a single repository presents a technical challenge in itself, the ingestion of data into the CENDARI repository also opens up the possibility to process and index them through data extraction, entity recognition, semantic enhancement and other transformations. In this way the CENDARI project was able to act as a bridge between cultural heritage institutions and historical researchers, insofar as it drew together holdings from a broad range of institutions and enabled the browsing of this heterogeneous content within a single search space. This paper describes a broad range of ways in which the CENDARI project acquired data from cultural heritage institutions as well as the necessary technical background. In exemplifying diverse data creation or acquisition strategies, multiple formats and technical solutions, assets and drawbacks of a repository, this “White Book” aims at providing guidance and advice as well as best practices for archivists and cultural heritage institutions collaborating or planning to collaborate with infrastructure projects.

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    Authors: Edmond, J.; Bulatovic, N.; O'Connor, A.;

    The Collaborative EuropeaN Digital Archival Research Infrastructure (CENDARI) project has developed a new virtual environment for humanities research, reimagining the analogue landscape of research sources for medieval and modern history and humanities research infrastructure models for the digital age. To achieve this, the project has needed to be sensitive to the ways in which historical research practices in the 21st Century are distinct from those of earlier eras, harnessing the affordances of technology to reveal connections and support or refute hypotheses, enabling transnational approaches, and federating sources beyond the well-known and across the largely national organization paradigms that dominate within traditional knowledge infrastructures (libraries, archives and museums). This paper describes both the user-centered development methodology deployed by the project and the resulting technical architecture adopted to meet these challenging requirements. The resulting system is a robust ‘enquiry environment’ able to integrate a variety of data types and standards with bespoke tools for the curation, annotation, communication and validation of historical insight.

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    Article . 2015
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  • Authors: Lopez, Patrice; Meyer, Alexander; Romary, Laurent;

    International audience; CENDARI (Collaborative European Digital Archive Infrastructure) is a research infrastructure project aimed at integrating digital archives and resources for research on medieval and modern European history.The project brings together information and computer scientists with historians and existing historical research infrastructures (archives, libraries, other digital projects) to improve conditions for digital historical scholarship. CENDARIhas engaged in extensive networking with the archives and libraries of Europe, especially those in Eastern Europe.CENDARI is a 4-year, European-Commission-funded project led by Trinity College Dublin, in partnership with 14 institutions across 8 countries.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Petzold, Andreas; Bundke, Ulrich; Hienola, Anca; Laj, Paolo; +10 Authors

    Abstract. Acquiring and distributing essential information for understanding global biogeochemical interactions between the atmosphere and ecosystems, and how climate-ecosystem feedback loops may change atmospheric composition in the future is a fundamental pre-requisite for societal resilience in view of climate change. Particularly, the detection of trends and periodicity in the presence of greenhouse gases and short-lived climate-active atmospheric constituents is an important aspect of climate science. Thus, the availability of an easy and fast access to reliable, long-term, and high-quality environmental data is recognized as fundamental for research and for developing environmental prediction and assessment services. In our Opinion Article, we develop the role environmental research infrastructures in Europe (ENVRI RIs) and particularly the atmosphere-centred research infrastructures ACTRIS, IAGOS and ICOS can assume with their capacities for standardised acquisition and reporting of long-term and high-quality observational data, complemented by rich metadata, for the provision of data by open access, and for data interoperability across different research fields including all fields of environmental sciences and beyond. Resulting from these capacities in data collection and provision, we elaborate on the novel research opportunities in atmospheric sciences which evolve from the combination of open-access and interoperable observational data, tools and technologies offered by data-intensive science, and the emerging service ecosystem of the collaboration platform ENVRI-Hub, hosted by the European Open Science Cloud.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ https://doi.org/10.5...arrow_drop_down
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    https://doi.org/10.5194/egusph...
    Preprint . 2023 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    Copernicus Publications
    Other literature type . 2023
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      https://doi.org/10.5194/egusph...
      Preprint . 2023 . Peer-reviewed
      License: CC BY
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      Copernicus Publications
      Other literature type . 2023
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Emiliano Degl'Innocenti; Alfredo Cosco; Fabrizio Butini; Roberta Giacomi; +1 Authors

    TRAME is a research infrastructure for medieval manuscripts. The TRAME engine scans a set of sources for searched terms and retrieves links to a wide range of possible information, from simple reference, to detailed manuscript record, to full text transcriptions. Currently, it is possible to perform queries by: free-text, shelfmark, author, title, date, copyst or incipit, on more than 80 selected scholarly digital resources across EU and USA. Since 2014 September 1st, TRAME has entered a new phase and the current work is focused on: extending the meta-search approach to other web resources, leveraging the users interaction to define an ontology for medieval manuscripts, re-designing the front-end towards a new UX approach.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao CNR ExploRAarrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Conference object . 2016
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    https://doi.org/10.1007/978-3-...
    Part of book or chapter of book . 2016 . Peer-reviewed
    License: Springer TDM
    Data sources: Crossref
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