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  • Authors: Julia Damerow;

    Two of the cornerstones of modern software development, Continuous Integration (CI) and Continuous Delivery (CD) are practices to support collaborative and fast development through automation. With CI, software is built and tested on every code push. Using triggers from version control systems, code is compiled and tested against defined criteria, such as unit and integration tests. This ensures that the latest changes to the code base are compatible with the existing code base, i.e. they integrate well. On top of this, CD is the practices of packaging and publishing the build artifact of a successful integration run. In an optimal setup, this allows the immediate delivery of the latest successfully built version to a production environment. In our first Virtual Workshop we will be hearing from Malte Vogl on his experience using Gitlab CI for Django projects. Expanding on Malte’s introduction, Julia Damerow and Carsten Thiel will open up the general discussion with their experiences using Travis-CI and Jenkins.

    DARIAH-DEarrow_drop_down
    DARIAH-DE
    Other ORP type . 2018
    Data sources: B2FIND
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      DARIAH-DE
      Other ORP type . 2018
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Jörg Lehmann (Eberhard Karls Universität Tübingen), author;

    This text elucidates how we make use of the FAIR data principles.

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    DARIAH-DE
    Other ORP type . 2020
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ DARIAH-DEarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      DARIAH-DE
      Other ORP type . 2020
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    Authors: Panagiota Koltsida;

    Gnomee is a web knowledge base that contains Digital Solutions which can act as potential Digital Game Changers in rural areas, agriculture, and forestry. Each digital solution is classified under a set of taxonomies useful to farmers, facilitators and researchers willing to identify solutions for these areas for exploitation or further enhancement. To ensure wide acceptance and exploitation of digital tools from - but not only- the research community, it is important to re-use and exploit common solutions and services with regards to core functionalities and operations and not introduce additional options, compared to existing ones. This approach should be followed from applications that require users to create an account. The challenge, in this specific context, is to eliminate the need for asking users to create yet another account and increase the possibility of exploiting the full potential of your web application. The full list of EOSC in practice stories is available here

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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Authors: Claudia Cedeño Báez (Eberhard Karls Universität Tübingen), creator;

    This animation visualizes the relative percentages of genre distributions in seven of the modernist magazines.

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    DARIAH-DE
    Other ORP type . 2020
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      DARIAH-DE
      Other ORP type . 2020
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pasquale Pagano; Sara Pittonet; Federico Drago; Maria Giuffrida;

    There are several research infrastructures or other data services running in Europe that cover a multitude of marine-related sciences, providing specific datasets coming from observations collected with different methods. These infrastructures constitute a diverse world, each looking at a piece of the big picture, sometimes hindering collaboration and data sharing. Blue-Cloud aims to overcome fragmentation and build a bridge between thematic science clusters - such as marine, climate, food and agriculture sciences - and EOSC, creating a data federation and providing a common access to a so-called thematic EOSC for marine data. By connecting leading marine data management infrastructures with horizontal e-infrastructures, the project aims to maximise the exploitation of data resources available from different sources. The Blue-Cloud framework consists of two major technical components: (1) a Blue-Cloud Data Discovery and Access service, already presented in a previous EOSC in practice story, to serve federated discovery and access to blue data infrastructures, and (2) a Blue-Cloud Virtual Research Environment (VRE) to provide computing platforms and analytical services facilitating the collaboration between researchers, which is detailed hereafter. The Blue-Cloud VRE is powered by the D4Science Infrastructure. [M. Assante et al. (2019) Enacting open science by D4Science. Future Gener. Comput. Syst. 101: 555-563 10.1016/j.future.2019.05.063 ] The full list of EOSC in practice stories is available here

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    ZENODO
    Other ORP type . 2023
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      ZENODO
      Other ORP type . 2023
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Elisa Trasatti;

    Geohazard community is a global community dealing with scientific problems with fragmentation, unequal access to data and research methods, and isolation. This is critical as volcanic eruptions or similar natural disasters can impact neighbouring countries and even entire continents. The main challenge faced by Geohazard therefore is to create services that can ease access to data and tools, conduct high-quality research, and share the findings. These services should provide timely and scientifically accurate information about volcanic and seismic activity, not only within the research community but also to various end-users and stakeholders at national, European, and international levels.

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    ZENODO
    Other ORP type . 2023
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Other ORP type . 2023
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      ZENODO
      Other ORP type . 2023
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Other ORP type . 2023
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    Authors: Bonvin Alexandre;

    Structural biology is a field that focuses on understanding the intricate details of biological macromolecules at the atomic level, including their structural and dynamic properties. This knowledge is essential for understanding the majority of cellular processes and has various applications in fields like health and food sciences. The WeNMR initiative aims to provide valuable tools to the structural biology community while ensuring their accessibility in a user-friendly, efficient, and cost-effective manner. The challenge is to execute these tools in a distributed environment that optimizes their utilization, thus benefiting the wider scientific community.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    Authors: Koltsida, Panagiota; Toli, Eleni; Giuffrida, Maria; Willems, Marieke;

    This EOSC in practice story is mainly addressed at researchers or research organisations who want to make their work available to the community, while protecting it with a compatible license. The Licence Clearance Tool (LCT) here described automates the licence clearance of derivative works and the selection of the most suitable licence for the users’ resources. The tool provides a guided approach for establishing the proper open-source license required for the creation of a new (or synthetic) dataset, media, software etc. or for the re-use of existing unlicensed content. The service described is available on NI4OS-Europe service catalogue The full list of EOSC in practice stories is available here

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      ZENODO
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    Authors: Kemmer, Isabel; Keppler, Antje; Serrano-Solano, Beatriz; Rybina, Arina; +5 Authors

    Bioimaging has now entered the era of big data with faster than ever development of complex microscopy technologies leading to increasingly complex datasets. This enormous increase in data size and informational complexity within those datasets has brought with it several difficulties in terms of common and harmonized data handling, analysis and management practices, which are currently hampering the full potential of image data being realized. Here we outline a wide range of efforts and solutions currently being developed by the microscopy community to address these challenges on the path towards FAIR bioimage data. We also highlight how different actors in the microscopy ecosystem are working together, creating synergies that develop new approaches, and how research infrastructures, such as Euro-BioImaging, are fostering these interactions to shape the field.

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    https://zenodo.org/record/7788...
    Other ORP type . 2023
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      https://zenodo.org/record/7788...
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    Authors: Huis in 't Veld, Laura; Heider, Veronika;

    This user Guide provides information about using the Weblate software for translating the Dataverse User Interface. It was made for the participants of the SSHOC ‘Dataverse Translation Workshop’ (02/06/2021).

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  • Authors: Julia Damerow;

    Two of the cornerstones of modern software development, Continuous Integration (CI) and Continuous Delivery (CD) are practices to support collaborative and fast development through automation. With CI, software is built and tested on every code push. Using triggers from version control systems, code is compiled and tested against defined criteria, such as unit and integration tests. This ensures that the latest changes to the code base are compatible with the existing code base, i.e. they integrate well. On top of this, CD is the practices of packaging and publishing the build artifact of a successful integration run. In an optimal setup, this allows the immediate delivery of the latest successfully built version to a production environment. In our first Virtual Workshop we will be hearing from Malte Vogl on his experience using Gitlab CI for Django projects. Expanding on Malte’s introduction, Julia Damerow and Carsten Thiel will open up the general discussion with their experiences using Travis-CI and Jenkins.

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    Authors: Jörg Lehmann (Eberhard Karls Universität Tübingen), author;

    This text elucidates how we make use of the FAIR data principles.

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    Authors: Panagiota Koltsida;

    Gnomee is a web knowledge base that contains Digital Solutions which can act as potential Digital Game Changers in rural areas, agriculture, and forestry. Each digital solution is classified under a set of taxonomies useful to farmers, facilitators and researchers willing to identify solutions for these areas for exploitation or further enhancement. To ensure wide acceptance and exploitation of digital tools from - but not only- the research community, it is important to re-use and exploit common solutions and services with regards to core functionalities and operations and not introduce additional options, compared to existing ones. This approach should be followed from applications that require users to create an account. The challenge, in this specific context, is to eliminate the need for asking users to create yet another account and increase the possibility of exploiting the full potential of your web application. The full list of EOSC in practice stories is available here

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    Authors: Claudia Cedeño Báez (Eberhard Karls Universität Tübingen), creator;

    This animation visualizes the relative percentages of genre distributions in seven of the modernist magazines.

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    Authors: Pasquale Pagano; Sara Pittonet; Federico Drago; Maria Giuffrida;

    There are several research infrastructures or other data services running in Europe that cover a multitude of marine-related sciences, providing specific datasets coming from observations collected with different methods. These infrastructures constitute a diverse world, each looking at a piece of the big picture, sometimes hindering collaboration and data sharing. Blue-Cloud aims to overcome fragmentation and build a bridge between thematic science clusters - such as marine, climate, food and agriculture sciences - and EOSC, creating a data federation and providing a common access to a so-called thematic EOSC for marine data. By connecting leading marine data management infrastructures with horizontal e-infrastructures, the project aims to maximise the exploitation of data resources available from different sources. The Blue-Cloud framework consists of two major technical components: (1) a Blue-Cloud Data Discovery and Access service, already presented in a previous EOSC in practice story, to serve federated discovery and access to blue data infrastructures, and (2) a Blue-Cloud Virtual Research Environment (VRE) to provide computing platforms and analytical services facilitating the collaboration between researchers, which is detailed hereafter. The Blue-Cloud VRE is powered by the D4Science Infrastructure. [M. Assante et al. (2019) Enacting open science by D4Science. Future Gener. Comput. Syst. 101: 555-563 10.1016/j.future.2019.05.063 ] The full list of EOSC in practice stories is available here

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    Authors: Elisa Trasatti;

    Geohazard community is a global community dealing with scientific problems with fragmentation, unequal access to data and research methods, and isolation. This is critical as volcanic eruptions or similar natural disasters can impact neighbouring countries and even entire continents. The main challenge faced by Geohazard therefore is to create services that can ease access to data and tools, conduct high-quality research, and share the findings. These services should provide timely and scientifically accurate information about volcanic and seismic activity, not only within the research community but also to various end-users and stakeholders at national, European, and international levels.

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    Authors: Bonvin Alexandre;

    Structural biology is a field that focuses on understanding the intricate details of biological macromolecules at the atomic level, including their structural and dynamic properties. This knowledge is essential for understanding the majority of cellular processes and has various applications in fields like health and food sciences. The WeNMR initiative aims to provide valuable tools to the structural biology community while ensuring their accessibility in a user-friendly, efficient, and cost-effective manner. The challenge is to execute these tools in a distributed environment that optimizes their utilization, thus benefiting the wider scientific community.

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