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2,116 Data sources

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  • Thematic: No

  • The Online Resource for Community Annotation of Eukaryotes (ORCAE) is an online genome annotation resource offering users the necessary tools and information to validate and correct gene annotations. It is a gene-centric wiki-style annotation portal offering public access to a wide variety of plant, fungal and animal genomes. The basic setup of ORCAE is highly comparable to wiki systems such as MediaWiki, and the information page for each gene can be seen as a ‘topic’ page of a traditional text wiki.

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  • The BonaRes Repository stores soil and agricultural research data from research projects and long-term field experiments which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data and research data. Metadata includes AGROVOC keywords.

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  • MitImpact is a collection of genomic, clinical, and functional annotations for all nucleotide changes that cause non-synonymous substitutions in human mitochondrial protein-coding genes

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  • This site provides access to the output of the University of Sassari and of research centres of North Sardinia. Some items are not available as full-text, such items are clearly marked. The interface is available in Italian or English.

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  • SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured.

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  • MDM-Portal (Medical Data-Models) is a meta-data registry for creating, analysing, sharing and reusing medical forms, developed by the Institute of Medical Informatics, Heidelberg University Hospital in Germany. see also https://doi.org/10.1055/s-0044-1786839 Electronic forms for documentation of patient data are an integral part within the workflow of physicians. A huge amount of data is collected either through routine documentation forms (EHRs) for electronic health records or as case report forms (CRFs) for clinical trials. This raises major scientific challenges for health care, since different health information systems are not necessarily compatible with each other and thus information exchange of structured data is hampered. Software vendors provide a variety of individual documentation forms according to their standard contracts, which function as isolated applications. Furthermore, free availability of those forms is rarely the case. Currently less than 5 % of medical forms are freely accessible. Based on this lack of transparency harmonization of data models in health care is extremely cumbersome, thus work and know-how of completed clinical trials and routine documentation in hospitals are hard to be re-used. The MDM-Portal serves as an infrastructure for academic (non-commercial) medical research to contribute a solution to this problem. It already contains more than 25,000 system-independent forms (CDISC ODM Format, www.cdisc.org, Operational Data Model) with more than 600,000 data-elements. This enables researchers to view, discuss, download and export forms in most common technical formats such as PDF, CSV, Excel, SQL, SPSS, R, etc. A growing user community will lead to a growing database of medical forms. In this matter, we would like to encourage all medical researchers to register and add forms and discuss existing forms.

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  • APICURON is a database to credit and acknowledge the work of biocurators, it collects and aggregates biocuration events from third party resources and generates achievements and leaderboards.

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2,116 Data sources
  • The Online Resource for Community Annotation of Eukaryotes (ORCAE) is an online genome annotation resource offering users the necessary tools and information to validate and correct gene annotations. It is a gene-centric wiki-style annotation portal offering public access to a wide variety of plant, fungal and animal genomes. The basic setup of ORCAE is highly comparable to wiki systems such as MediaWiki, and the information page for each gene can be seen as a ‘topic’ page of a traditional text wiki.

    more_vert
  • The BonaRes Repository stores soil and agricultural research data from research projects and long-term field experiments which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data and research data. Metadata includes AGROVOC keywords.

    more_vert
  • MitImpact is a collection of genomic, clinical, and functional annotations for all nucleotide changes that cause non-synonymous substitutions in human mitochondrial protein-coding genes

    more_vert
  • more_vert
  • more_vert
  • This site provides access to the output of the University of Sassari and of research centres of North Sardinia. Some items are not available as full-text, such items are clearly marked. The interface is available in Italian or English.

    more_vert
  • SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured.

    more_vert
  • MDM-Portal (Medical Data-Models) is a meta-data registry for creating, analysing, sharing and reusing medical forms, developed by the Institute of Medical Informatics, Heidelberg University Hospital in Germany. see also https://doi.org/10.1055/s-0044-1786839 Electronic forms for documentation of patient data are an integral part within the workflow of physicians. A huge amount of data is collected either through routine documentation forms (EHRs) for electronic health records or as case report forms (CRFs) for clinical trials. This raises major scientific challenges for health care, since different health information systems are not necessarily compatible with each other and thus information exchange of structured data is hampered. Software vendors provide a variety of individual documentation forms according to their standard contracts, which function as isolated applications. Furthermore, free availability of those forms is rarely the case. Currently less than 5 % of medical forms are freely accessible. Based on this lack of transparency harmonization of data models in health care is extremely cumbersome, thus work and know-how of completed clinical trials and routine documentation in hospitals are hard to be re-used. The MDM-Portal serves as an infrastructure for academic (non-commercial) medical research to contribute a solution to this problem. It already contains more than 25,000 system-independent forms (CDISC ODM Format, www.cdisc.org, Operational Data Model) with more than 600,000 data-elements. This enables researchers to view, discuss, download and export forms in most common technical formats such as PDF, CSV, Excel, SQL, SPSS, R, etc. A growing user community will lead to a growing database of medical forms. In this matter, we would like to encourage all medical researchers to register and add forms and discuss existing forms.

    more_vert
  • APICURON is a database to credit and acknowledge the work of biocurators, it collects and aggregates biocuration events from third party resources and generates achievements and leaderboards.

    more_vert
  • more_vert